Patrick Byrne

Prof. Patrick Byrne

orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2013 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
LCLouise Comas
Louise Comas
SBSteven R. Becker
Steven R. Becker
VCVon Mark V. Cruz
Von Mark V. Cruz
PBPatrick Byrne
Patrick Byrne
DDDavid A. Dierig
David A. Dierig
Geneticists and breeders are positioned to breed plants with root traits that improve productivity under drought. However, a better understanding of root functional traits and how traits are related to whole plant strategies to increase crop productivity under different drought conditions is needed. Root traits associated with maintaining plant productivity under drought include small fine root diameters, long specific root length (SRL), and considerable root length density, especially at depths in soil with available water. In environments with late season water deficits, small xylem diameters in targeted seminal roots save soil water deep in the soil profile for use during crop maturation and result in improved yields. Capacity for deep root growth and large xylem diameters in deep roots may also improve root acquisition of water when ample water at depth is available. Xylem pit anatomy that makes xylem less ‘leaky’ and prone to cavitation warrants further exploration holding promise that such traits may improve plant productivity in water-limited environments without negatively impacting yield under adequate water conditions. Rapid resumption of root growth following soil rewetting may improve plant productivity under episodic drought. Genetic control of many of these traits through breeding appears feasible. Several recent reviews have covered methods for screening root traits but an appreciation for the complexity of root systems (e.g. functional differences between fine and coarse roots) needs to be paired with these methods to successfully identify relevant traits for crop improvement. Screening of root traits at early stages in plant development can proxy traits at mature stages but verification is needed on a case by case basis that traits are linked to increased crop productivity under drought. Examples in lesquerella (Physaria) and rice (Oryza) show approaches to phenotyping of root traits and current understanding of root trait genetics for breeding.

1 March 2018 in Crop Science
Verified
Journal Article
Open access
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PBPatrick Byrne
Patrick Byrne
GVGayle Volk
Gayle Volk
CGCandice Gardner
Candice Gardner
MGMichael Gore
Michael Gore
PSPhilipp Simon
Philipp Simon
SSStephen Smith
Stephen Smith
Plant breeders require genetic diversity to develop cultivars that are productive, nutritious, tolerant of biotic and abiotic stresses, and make efficient use of water and fertilizer. The USDA‐ARS National Plant Germplasm System (NPGS) is a major source for global plant genetic resources (PGR), with accessions representing improved cultivars, breeding lines, landraces, and crop wild relatives (CWR), coupled with passport and trait evaluation data. The goal of this article is to facilitate use of PGR in plant breeding programs. Our specific objectives are (i) to summarize the structure and operation of the NPGS and its consultative and support committees, (ii) to review current use of the system by plant breeders, (iii) to describe constraints to improving the utility of PGR, and (iv) to discuss ways in which the NPGS might evolve to better meet the challenges facing agriculture and society in coming decades. The NPGS will enhance its relevance to plant breeding provided there is (i) ongoing attention to filling the gaps in NPGS collections, especially for CWR; (ii) a major increase in efforts to phenotype and genotype accessions using standardized methods; (iii) enhanced information content of the Genetic Resources Information Network (GRIN)‐Global system and improved interoperability with other databases; (iv) increased attention to prebreeding activities; (v) improved training opportunities in practices for incorporating PGR in breeding programs; and (vi) expanded outreach efforts to strengthen public support for the NPGS. We believe these steps will be implemented most effectively through coordinated efforts among USDA‐ARS, universities, the private sector, and international partners.

8 April 2016 in PLOS ONE
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Journal Article
Open access
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SGSarah M. Grogan
Sarah M. Grogan
GBGina Brown-Guedira
Gina Brown-Guedira
SHScott D. Haley
Scott D. Haley
GMGregory S. McMaster
Gregory S. McMaster
SRScott D. Reid
Scott D. Reid
PBPatrick Byrne
Patrick Byrne
Heading date in wheat (Triticum aestivum L.) and other small grain cereals is affected by the vernalization and photoperiod pathways. The reduced-height loci also have an effect on growth and development. Heading date, which occurs just prior to anthesis, was evaluated in a population of 299 hard winter wheat entries representative of the U.S. Great Plains region, grown in nine environments during 2011–2012 and 2012–2013. The germplasm was evaluated for candidate genes at vernalization (Vrn-A1, Vrn-B1, and Vrn-D1), photoperiod (Ppd-A1, Ppd-B1 and Ppd-D1), and reduced-height (Rht-B1 and Rht-D1) loci using polymerase chain reaction (PCR) and Kompetitive Allele Specific PCR (KASP) assays. Our objectives were to determine allelic variants known to affect flowering time, assess the effect of allelic variants on heading date, and investigate changes in the geographic and temporal distribution of alleles and haplotypes. Our analyses enhanced understanding of the roles developmental genes have on the timing of heading date in wheat under varying environmental conditions, which could be used by breeding programs to improve breeding strategies under current and future climate scenarios. The significant main effects and two-way interactions between the candidate genes explained an average of 44% of variability in heading date at each environment. Among the loci we evaluated, most of the variation in heading date was explained by Ppd-D1, Ppd-B1, and their interaction. The prevalence of the photoperiod sensitive alleles Ppd-A1b, Ppd-B1b, and Ppd-D1b has gradually decreased in U.S. Great Plains germplasm over the past century. There is also geographic variation for photoperiod sensitive and reduced-height alleles, with germplasm from breeding programs in the northern Great Plains having greater incidences of the photoperiod sensitive alleles and lower incidence of the semi-dwarf alleles than germplasm from breeding programs in the central or southern plains.

1 May 2005 in Crop Science
Verified
Journal Article
Closed access
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JBJoshua D. Butler
Joshua D. Butler
PBPatrick Byrne
Patrick Byrne
VMValiollah Mohammadi
Valiollah Mohammadi
PCPhillip L. Chapman
Phillip L. Chapman
SHScott D. Haley
Scott D. Haley

13 October 2015 in Euphytica
Verified
Journal Article
Closed access
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SBSteven R. Becker
Steven R. Becker
PBPatrick Byrne
Patrick Byrne
SRScott D. Reid
Scott D. Reid
WBWilliam L. Bauerle
William L. Bauerle
JMJohn K. McKay
John K. McKay
SHScott D. Haley
Scott D. Haley

1 September 2016 in Crop Science
Verified
Journal Article
Closed access
PDF file
SGSarah M. Grogan
Sarah M. Grogan
JAJosh Anderson
Josh Anderson
PBP. Stephen Baenziger
P. Stephen Baenziger
KFKatherine Frels
Katherine Frels
MGMary J. Guttieri
Mary J. Guttieri
PBPatrick Byrne
Patrick Byrne