Cinnamomum bodinieri is a tree species highly valued for its superior-quality timber and ecological benefits. However, its large-scale propagation is hindered by the low efficiency of adventitious root (AR) formation. This study investigated the physiological and molecular mechanisms underlying AR formation in C. bodinieri. The results revealed that ARs originate from callus tissue, with the root primordium classified as a latent type. During AR formation, concentrations of soluble protein and soluble sugar decreased, while the activities of superoxide dismutase (SOD), peroxidase (POD), and indole-3-acetic acid oxidase (IAAO) peaked 20 days after cutting (CB2), with polyphenol oxidase (PPO) activity exhibiting an “N”-shaped trend. These findings indicate that substantial nutrient consumption is required for AR formation, with SOD, POD, PPO, and IAAO positively regulating the process. Indole-3-acetic acid (IAA) levels significantly decreased during the early stages of cutting but increased thereafter, whereas the concentration of abscisic acid (ABA) continuously rose. Similar trends were observed for zeatin riboside (ZR) and gibberellic acid (GA). Transcriptome analysis identified 28 key genes involved in plant hormone signal transduction pathways. Furthermore, weighted gene co-expression network analysis (WGCNA) pinpointed 14 hub genes, including CYP94B3 and NAC82, linked to hormone-associated traits. Furthermore, quantitative real-time PCR (qRT-PCR) confirmed the accuracy of the transcriptome sequencing results. This analysis uncovered critical interactions between hormonal signaling pathways and pivotal gene networks. Overall, the findings highlight the central regulatory role of endogenous hormones in AR formation, with IAA serving as the predominant regulator.

Cinnamomum camphora is an ecologically and economically significant species, highly valued for its essential oil production and environmental benefits. Although a tissue culture system has been established for C. camphora, large-scale propagation remains limited due to the inconsistent formation of adventitious roots (ARs). This study investigated AR formation from callus tissue, focusing on associated physiological changes and gene expression dynamics. During AR induction, contents of soluble sugars and proteins decreased, alongside reduced activities of antioxidant enzymes, including superoxide dismutase (SOD), peroxidase (POD), and polyphenol oxidase (PPO). Levels of indole-3-acetic acid (IAA) and abscisic acid (ABA) decreased significantly throughout AR formation. Zeatin riboside (ZR) levels initially declined and then rose, whereas gibberellic acid (GA) levels displayed the opposite trend. Comparative transcriptomic and temporal expression analyses identified differentially expressed genes (DEGs), which were grouped into four distinct expression patterns. KEGG pathway enrichment indicated that 67 DEGs are involved in plant hormone signaling pathways and that 38 DEGs are involved in the starch and sucrose metabolism pathway. Additionally, protein–protein interaction network (PPI) analysis revealed ten key regulatory genes, which are mainly involved in auxin, cytokinin, GA, ABA, and ethylene signaling pathways. The reliability of the transcriptome data was further validated by quantitative real-time PCR. Overall, this study provides new insights into the physiological and molecular mechanisms underlying AR formation in C. camphora and offers valuable guidance for optimizing tissue culture systems.

Cinnamomum parthenoxylon (Jack) Meisner is an important spice tree species in southern China. In in vitro cultures of C. parthenoxylon, the young stem explants can differentiate into adventitious buds and roots under different exogenous growth regulator conditions. However, the underlying regulatory mechanisms governing this differentiation process remain unclear. In this study, physiological and biochemical characteristics were measured, and transcriptomic sequencing was performed in different differentiation processes. Significant changes in physiological and biochemical parameters were observed during the differentiation of the young stems. Soluble sugars, soluble proteins, malondialdehyde (MDA), zeatin riboside (ZR), abscisic acid (ABA), gibberellin (GA) content, the (IAA + GA + ZR)/ABA ratio, and polyphenol oxidase (PPO) activity displayed contrasting expression patterns during the formation of adventitious buds and roots. The RNA-seq result revealed that the differentiation direction of young stems is regulated by the synthesis of endogenous hormones and associated signaling pathways. At the same time, phenylpropanoid metabolism and glucose metabolism pathways acted as auxiliary pathways, facilitating the formation of adventitious buds and roots. Furthermore, quantitative real-time PCR (qRT-PCR) results were highly consistent with transcriptome sequencing results. This study lays the foundation for exploring the directional differentiation of young stems in C. parthenoxylon.

Phoebe bournei is an important economic tree species in China, its large-scale propagation is limited by the difficulty of adventitious root (AR) formation in cuttings. In this study, morphological, physiological, and transcriptomic analyses were conducted to investigate the process of AR formation in P. bournei. The results showed that ARs mainly originated from callus tissue. During AR formation, soluble sugar and soluble protein contents changed significantly. Malondialdehyde (MDA) and oxygen free radicals (OFRs) peaked at first sampling stage (PB0), while the activities of polyphenol oxidase (PPO) and indoleacetic acid oxidase (IAAO) exhibited similar patterns. Lignin content increased during callus induction stage, whereas phenolic content continuously declined throughout rooting. Endogenous hormone levels also changed markedly, and Orthogonal partial least squares discriminant analysis (OPLS-DA) analysis indicated that indole-3-acetic acid (IAA) and abscisic acid (ABA) played dominant roles in this process. KEGG enrichment analysis revealed significant enrichment of the phenylpropanoid biosynthesis pathway in all three comparison groups. A total of 48 differentially expressed genes (DEGs) were enriched in plant hormone signal transduction pathways, with 22 and 14 genes associated with IAA and ABA signaling, respectively. Weighted gene co-expression network analysis (WGCNA) further identified two hub modules related to IAA and ABA contents, including eight hub genes such as D6PKL1 and ISTL1. Correlation analysis revealed that the hub genes D6PKL1 and HSP were significantly positively correlated with IAA4 in the IAA signaling pathway. Overall, this study provides new insights into the mechanisms underlying AR formation in P. bournei cuttings and offers a theoretical basis for optimizing its clonal propagation system.

A pluripotent callus is central to genetic transformation in Cinnamomum parthenoxylon; however, the molecular and cellular mechanisms regulating callus formation and subsequent differentiation remain unelucidated, hindering progress in its genetic improvement. This study systematically investigated the dynamic changes during the in vitro regeneration of C. parthenoxylon through morphological observations, physiological assays, and transcriptomic analyses, while comparing differences in callus formation under varying induction conditions to elucidate the mechanism of its high-efficiency regeneration. The results showed that the formation of a pluripotent callus is a critical step in C. parthenoxylon regeneration, characterized by the presence of highly proliferative cell zones. Compared to an ordinary callus (P3C), a pluripotent callus (P3) exhibited higher activities of polyphenol oxidase (PPO) and indole-3-acetic acid oxidase (IAAO), as well as elevated levels of zeatin riboside (ZR) and abscisic acid (ABA). In contrast, P3 showed lower levels of soluble sugars, soluble proteins, malondialdehyde (MDA), indole-3-acetic acid (IAA), and gibberellins (GA), a reduced IAA/ZR ratio, and diminished peroxidase (POD) activity. Weighted gene co-expression network analysis (WGCNA) identified 27 hub transcription factors (TFs) strongly associated with IAA/ZR, primarily from the ERF, bHLH, MYB, WRKY, and C3H families. Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses revealed the significant enrichment of differentially expressed genes (DEGs) related to plant hormone signal transduction and cell wall metabolism during pluripotent callus acquisition. Further investigations revealed that five genes encoding a putative indole-3-acetic acid-amido synthetase GH3.1, protein TIFY 10A, a two-component response regulator ARR2-like isoform X2, and xyloglucan endotransglucosylase/hydrolase, likely promoting callus pluripotency by modulating plant hormone signaling and cell wall metabolism, thereby enhancing in vitro regeneration in C. parthenoxylon. In summary, this study provides critical insights into the molecular mechanisms of C. parthenoxylon regeneration and offers valuable germplasm resources for establishing an efficient and stable genetic transformation system via tissue culture.

Cinnamomum camphora seed kernels are a potentially valuable fatty oil resource; however, their lipid composition and dynamic changes during development remain poorly understood. In this study, morphological and anatomical observations combined with liquid chromatography–tandem mass spectrometry (LC-MS/MS)-based lipidomics were used to investigate lipid accumulation patterns in C. camphora seed kernels across five developmental stages. The results showed that seed development followed a distinctive pattern in which morphological maturation preceded physiological maturity. A total of 627 lipid molecules were identified and classified into 27 subclasses and 5 major classes. Among them, glycerolipids (GLs) and glycerophospholipids (GPs) were the dominant lipid classes, with triacylglycerols (TGs) representing the principal storage lipids. Approximately 84.2% of the detected lipids were unsaturated, indicating a highly unsaturated lipid profile. The fatty acid composition was enriched in medium-chain fatty acids (MCFAs), especially decanoic acid and lauric acid, suggesting that C. camphora seed kernel oil possesses distinctive compositional characteristics compared with conventional fatty oils. In addition, coenzyme Q (CoQ) showed relatively high abundance and dynamic accumulation during seed development. Differential lipid analysis further revealed that lipid remodelling occurred mainly during the early developmental stages and was significantly associated with glycerolipid and glycerophospholipid metabolism. Diacylglycerols (DGs), phosphatidylcholines (PCs), and phosphatidylethanolamines (PEs) decreased during early development, whereas TGs accumulated continuously from the middle stage onwards. Overall, this study provides a systematic characterisation of lipid composition and developmental dynamics in C. camphora seed kernels and offers a theoretical basis for their future utilisation as a novel functional fatty oil resource.