Crabapples (Malus spp.) are widely planted ornamental and multipurpose trees in temperate regions and represent an important component of forest and landscape resources. However, the absence of a standardized classification framework has led to nomenclatural confusion, hindering germplasm conservation, breeding, and international exchange. In this study, 80 introduced crabapple cultivars preserved in the germplasm repository of Nanjing Forestry University were systematically evaluated using 55 morphological traits of flowers, leaves, fruits, and tree architecture. A hierarchical framework was established based on flower type and corolla color, dividing cultivars into Single, Semidouble, and Double Flower groups, with further subdivisions of Single cultivars by color. Numerical taxonomy (R- and Q-type clustering) validated the robustness of this framework, identifying petal number and corolla color as the most consistent traits across cultivars and seasons (inter-cultivar CV < 10%), serving as reliable diagnostic indicators, although within-cultivar variation was not quantified. The proposed system resolved frequent misidentifications (e.g., M. ‘Kelsey’ and M. ‘Molten Lava’) and provided standardized descriptors for cultivar identification. Beyond taxonomy, the framework enhances germplasm management, supports nursery production and landscape forestry, and facilitates international exchange of ornamental resources. These findings highlight the potential of integrating morphological and numerical approaches for germplasm diversity assessment and contribute to the development of a unified global classification system for ornamental crabapples.