Yifan Zhang

Dr. Yifan Zhang

orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 February 2024 in Scientific Reports
Verified
Journal Article
Open access
PDF file
YZYifan Zhang
Yifan Zhang
RWRui Wu
Rui Wu
SDSergiu M. Dascalu
Sergiu M. Dascalu
FHFrederick C. Harris
Frederick C. Harris
Multivariate time series forecasting is a critical problem in many real-world scenarios. Recent advances in deep learning have significantly enhanced the ability to tackle such problems. However, a primary challenge in time series forecasting comes from the imbalanced time series data that include extreme events. Despite being a small fraction of the data instances, extreme events can have a negative impact on forecasting as they deviate from the majority. However, many recent time series forecasting methods neglect this issue, leading to suboptimal performance. To address these challenges, we introduce a novel model, the Extreme Event Adaptive Gated Recurrent Unit (eGRU), tailored explicitly for forecasting tasks. The eGRU is designed to effectively learn both normal and extreme event patterns within time series data. Furthermore, we introduce a time series data segmentation technique that divides the input sequence into segments, each comprising multiple time steps. This segmentation empowers the eGRU to capture data patterns at different time step resolutions while simultaneously reducing the overall input length. We conducted comprehensive experiments on four real-world benchmark datasets to evaluate the eGRU’s performance. Our results showcase its superiority over vanilla RNNs, LSTMs, GRUs, and other state-of-the-art RNN variants in multivariate time series forecasting. Additionally, we conducted ablation studies to demonstrate the consistently superior performance of eGRU in generating accurate forecasts while incorporating a diverse range of labeling results.

23 January 2024 in IEEE Access
Verified
Journal Article
Open access
YZYifan Zhang
Yifan Zhang
RWRui Wu
Rui Wu
SDSergiu M. Dascalu
Sergiu M. Dascalu
Frederick C Harris, Jr.Frederick C Harris, Jr.
Frederick C Harris, Jr.
Multivariate Time Series (MTS) forecasting entails the intricate process of modeling temporal dependencies within historical data records. Transformers have demonstrated remarkable performance in MTS forecasting due to their capability to capture long-term dependencies. However, prior work has been confined to modeling temporal dependencies at either a fixed scale or multiple scales that exponentially increase (most with base 2). This limitation impedes their capacity to effectively capture diverse seasonalities. In our study, we present a dimension-invariant embedding technique designed to capture short-term temporal dependencies. This procedure projects MTS data into a higher-dimensional space while preserving the original time steps and variable dimensions. Furthermore, we present a novel Multi-scale Transformer Pyramid Network (MTPNet), specifically designed to capture temporal dependencies at multiple unconstrained scales effectively. The predictions are inferred from multi-scale latent representations obtained from transformers at various scales. Extensive experiments on nine benchmark datasets demonstrate that the proposed MTPNet outperforms recent state-of-the-art methods. This enhancement in performance is particularly pronounced in datasets rich in fine-scale information, as it enables MTPNet to effectively capture a wide spectrum of temporal dependencies, ranging from fine to coarse scales. This finding highlights MTPNet’s notable potential in analyzing MTS data sampled at the minute level. Code is available at github.com/MTPNet.

20 February 2023 in BMC Bioinformatics
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Journal Article
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YZYifan Zhang
Yifan Zhang
DTDuc Tran
Duc Tran
TNTin Nguyen
Tin Nguyen
SDSergiu M. Dascalu
Sergiu M. Dascalu
Frederick C Harris, Jr.Frederick C Harris, Jr.
Frederick C Harris, Jr.
Background: The advance in single-cell RNA sequencing technology has enhanced the analysis of cell development by profiling heterogeneous cells in individual cell resolution. In recent years, many trajectory inference methods have been developed. They have focused on using the graph method to infer the trajectory using single-cell data, and then calculate the geodesic distance as the pseudotime. However, these methods are vulnerable to errors caused by the inferred trajectory. Therefore, the calculated pseudotime suffers from such errors. Results: We proposed a novel framework for trajectory inference called the single-cell data Trajectory inference method using Ensemble Pseudotime inference (scTEP). scTEP utilizes multiple clustering results to infer robust pseudotime and then uses the pseudotime to fine-tune the learned trajectory. We evaluated the scTEP using 41 real scRNA-seq data sets, all of which had the ground truth development trajectory. We compared the scTEP with state-of-the-art methods using the aforementioned data sets. Experiments on real linear and non-linear data sets demonstrate that our scTEP performed superior on more data sets than any other method. The scTEP also achieved a higher average and lower variance on most metrics than other state-of-the-art methods. In terms of trajectory inference capacity, the scTEP outperforms those methods. In addition, the scTEP is more robust to the unavoidable errors resulting from clustering and dimension reduction. Conclusion: The scTEP demonstrates that utilizing multiple clustering results for the pseudotime inference procedure enhances its robustness. Furthermore, robust pseudotime strengthens the accuracy of trajectory inference, which is the most crucial component in the pipeline. scTEP is available at https://cran.r-project.org/package=scTEP.

10 July 2024 in Scientific Reports
Verified
Journal Article
Open access
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YZYifan Zhang
Yifan Zhang
RWRui Wu
Rui Wu
SDSergiu M. Dascalu
Sergiu M. Dascalu
FHFrederick C. Harris
Frederick C. Harris
Transformers have achieved remarkable performance in multivariate time series(MTS) forecasting due to their capability to capture long-term dependencies. However, the canonical attention mechanism has two key limitations: (1) its quadratic time complexity limits the sequence length, and (2) it generates future values from the entire historical sequence. To address this, we propose a Dozer Attention mechanism consisting of three sparse components: (1) Local, each query exclusively attends to keys within a localized window of neighboring time steps. (2) Stride, enables each query to attend to keys at predefined intervals. (3) Vary, allows queries to selectively attend to keys from a subset of the historical sequence. Notably, the size of this subset dynamically expands as forecasting horizons extend. Those three components are designed to capture essential attributes of MTS data, including locality, seasonality, and global temporal dependencies. Additionally, we present the Dozerformer Framework, incorporating the Dozer Attention mechanism for the MTS forecasting task. We evaluated the proposed Dozerformer framework with recent state-of-the-art methods on nine benchmark datasets and confirmed its superior performance. The experimental results indicate that excluding a subset of historical time steps from the time series forecasting process does not compromise accuracy while significantly improving efficiency. Code is available at https://github.com/GRYGY1215/Dozerformer.

24 September 2025 in Journal of Imaging
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Journal Article
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MYMing Yang
Ming Yang
Rui WuRui Wu
Rui Wu
YYYunxuan Yang
Yunxuan Yang
LTLiang Tao
Liang Tao
YZYifan Zhang
Yifan Zhang
GRGnana Prakash Reddy prakash Donthi Donthi Reddy
Gnana Prakash Reddy prakash Donthi Donthi Reddy
Image matching plays a critical role in a wide range of computer vision applications, including object recognition, 3D reconstruction, aiming-point and six-degree-of-freedom detection for aiming devices, and video surveillance. Over the past three decades, image-matching algorithms and techniques have evolved significantly, from handcrafted feature extraction algorithms to modern approaches powered by deep learning neural networks and attention mechanisms. This paper provides a comprehensive review of image-matching techniques, aiming to offer researchers valuable insights into the evolving landscape of this field. It traces the historical development of feature-based methods and examines the transition to neural network-based approaches that leverage large-scale data and learned representations. Additionally, this paper discusses the current state of the field, highlighting key algorithms, benchmarks, and real-world applications. Furthermore, this study introduces some recent contributions to this area and outlines promising directions for future research, including H-matrix optimization, LoFTR model speedup, and performance improvements. It also identifies persistent challenges such as robustness to viewpoint and illumination changes, scalability, and matching under extreme conditions. Finally, this paper summarizes future trends for research and development in this field.

14 February 2022
Verified
Book Chapter
Closed access
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CLChristopher Lewis
Christopher Lewis
DEDaniel Enriquez
Daniel Enriquez
LCLucas Calabrese
Lucas Calabrese
YZYifan Zhang
Yifan Zhang
SASteven J. Anbro
Steven J. Anbro
Frederick C Harris, Jr.Frederick C Harris, Jr.
Frederick C Harris, Jr.