Gonçalo M. Marques

Dr. Gonçalo M. Marques


Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 May 2018 in PLOS Computational Biology
Verified
Journal Article
Open access
PDF file
GMGonçalo M. Marques
Gonçalo M. Marques
SAStarrlight Augustine
Starrlight Augustine
KLKonstadia Lika
Konstadia Lika
LPLaure Pecquerie
Laure Pecquerie
Tiago  DomingosTiago Domingos
Tiago Domingos
SKSebastiaan A L M Kooijman
Sebastiaan A L M Kooijman
We developed new methods for parameter estimation-in-context and, with the help of 125 authors, built the AmP (Add-my-Pet) database of Dynamic Energy Budget (DEB) models, parameters and referenced underlying data for animals, where each species constitutes one database entry. The combination of DEB parameters covers all aspects of energetics throughout the full organism’s life cycle, from the start of embryo development to death by aging. The species-specific parameter values capture biodiversity and can now, for the first time, be compared between animals species. An important insight brought by the AmP project is the classification of animal energetics according to a family of related DEB models that is structured on the basis of the mode of metabolic acceleration, which links up with the development of larval stages. We discuss the evolution of metabolism in this context, among animals in general, and ray-finned fish, mollusks and crustaceans in particular. New DEBtool code for estimating DEB parameters from data has been written. AmPtool code for analyzing patterns in parameter values has also been created. A new web-interface supports multiple ways to visualize data, parameters, and implied properties from the entire collection as well as on an entry by entry basis. The DEB models proved to fit data well, the median relative error is only 0.07, for the 1035 animal species at 2018/03/12, including some extinct ones, from all large phyla and all chordate orders, spanning a range of body masses of 16 orders of magnitude. This study is a first step to include evolutionary aspects into parameter estimation, allowing to infer properties of species for which very little is known. We discovered that parameters of Dynamic Energy Budget (DEB) models can be estimated from a set of simple data on animal life history aspects, growth and reproduction, if treated in combination. Apart from goodness-of-fit as an estimation criterion, relations with parameter values of other species are important, since DEB parameters have a clear physiological interpretation and a good fit for the wrong reasons is always a risk to consider. We developed and optimized methods for this type of parameter estimation-in-context and organized the results of over 1000 animal species in the open-access Add-my-Pet (AmP) database, to which 125 authors contributed so far. We also developed software package AmPtool to compare parameter values in the collection, that builds on DEBtool to assist applications of DEB theory. A family of related DEB models, structured with respect to the modes of metabolic acceleration, captures biodiversity, including various life stages. We discuss some features of the family structure of DEB models in an evolutionary context. The AmP collection has a great potential for research on the role of biodiversity in ecosystem structure and functioning, which will grow with the size of the database.

1 August 2015 in Ecological Monographs
Verified
Journal Article
Closed access
ALAna L. Llandres
Ana L. Llandres
GMGonçalo M. Marques
Gonçalo M. Marques
JMJames L. Maino
James L. Maino
SKS. A. L. M. Kooijman
S. A. L. M. Kooijman
MKMichael R. Kearney
Michael R. Kearney
JCJérôme Casas
Jérôme Casas

1 January 2019 in Journal of Sea Research
Verified
Journal Article
Closed access
GMGonçalo M. Marques
Gonçalo M. Marques
KLKonstadia Lika
Konstadia Lika
SAStarrlight Augustine
Starrlight Augustine
LPLaure Pecquerie
Laure Pecquerie
SKSebastiaan A.L.M. Kooijman
Sebastiaan A.L.M. Kooijman

1 January 2019 in Journal of Sea Research
Verified
Journal Article
Closed access
YTYoann Thomas
Yoann Thomas
JFJonathan Flye-Sainte-Marie
Jonathan Flye-Sainte-Marie
DCDenis Chabot
Denis Chabot
AAArturo Aguirre-Velarde
Arturo Aguirre-Velarde
GMGonçalo M. Marques
Gonçalo M. Marques
LPLaure Pecquerie
Laure Pecquerie

1 July 2018 in Science of The Total Environment
Verified
Journal Article
Closed access
JBJan Baas
Jan Baas
SAStarrlight Augustine
Starrlight Augustine
GMGonçalo M. Marques
Gonçalo M. Marques
JDJean-Lou Dorne
Jean-Lou Dorne

29 January 2004 in Physical Review D
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Journal Article
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PBPedro Bicudo
Pedro Bicudo
GMGonçalo M. Marques
Gonçalo M. Marques
We study the very recently discovered Θ+(1540) at SPring-8, at ITEP and at CLAS-Thomas Jefferson Lab. We apply the same RGM techniques that already explained with success the repulsive hard core of nucleon-nucleon, kaon-nucleon exotic scattering, and the attractive hard core present in pion-nucleon and pion-pion nonexotic scattering. We find that the K−N repulsion excludes the Θ+ as a K−N s-wave pentaquark. We explore the Θ+ as a heptaquark, equivalent to a N+π+K Borromean bound state, with positive parity and total isospin I=0. We find that the kaon-nucleon repulsion is canceled by the attraction existing both in the pion-nucleon and pion-kaon channels. Although we are not yet able to bind the total three body system, we find that the Θ+ may still be a heptaquark state. We conclude with predictions that can be tested experimentally.