Vladimir Popenko

Dr. Vladimir Popenko


Research Focus & Metrics

Academic Career Length

52Years (1975-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 June 2008 in PLOS ONE
Verified
Journal Article
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EEEvelina Edelweiss
Evelina Edelweiss
TBTaras G. Balandin
Taras G. Balandin
JIJulia L. Ivanova
Julia L. Ivanova
GLGennady V. Lutsenko
Gennady V. Lutsenko
OLOlga G. Leonova
Olga G. Leonova
SDSergey Deyev
Sergey Deyev
RNases are currently studied as non-mutagenic alternatives to the harmful DNA-damaging anticancer drugs commonly used in clinical practice. Many mammalian RNases are not potent toxins due to the strong inhibition by ribonuclease inhibitor (RI) presented in the cytoplasm of mammalian cells. In search of new effective anticancer RNases we studied the effects of barnase, a ribonuclease from Bacillus amyloliquefaciens, on human cancer cells. We found that barnase is resistant to RI. In MTT cell viability assay, barnase was cytotoxic to human carcinoma cell lines with half-inhibitory concentrations (IC50) ranging from 0.2 to 13 µM and to leukemia cell lines with IC50 values ranging from 2.4 to 82 µM. Also, we characterized the cytotoxic effects of barnase-based immunoRNase scFv 4D5-dibarnase, which consists of two barnase molecules serially fused to the single-chain variable fragment (scFv) of humanized antibody 4D5 that recognizes the extracellular domain of cancer marker HER2. The scFv 4D5-dibarnase specifically bound to HER2-positive cells and was internalized via receptor-mediated endocytosis. The intracellular localization of internalized scFv 4D5-dibarnase was determined by electronic microscopy. The cytotoxic effect of scFv 4D5-dibarnase on HER2-positive human ovarian carcinoma SKOV-3 cells (IC50 = 1.8 nM) was three orders of magnitude greater than that of barnase alone. Both barnase and scFv 4D5-dibarnase induced apoptosis in SKOV-3 cells accompanied by internucleosomal chromatin fragmentation, membrane blebbing, the appearance of phosphatidylserine on the outer leaflet of the plasma membrane, and the activation of caspase-3. These results demonstrate that barnase is a potent toxic agent for targeting to cancer cells.

1 May 2012 in Biochimie
Verified
Journal Article
Closed access
MSMaria Semashko
Maria Semashko
IGInmaculada González
Inmaculada González
JSJane Shaw
Jane Shaw
OLOlga G. Leonova
Olga G. Leonova
VPVladimir Popenko
Vladimir Popenko
NKNatalia O. Kalinina
Natalia O. Kalinina

30 December 2021 in Antioxidants
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Journal Article
Open access
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MGMichail V. Golikov
Michail V. Golikov
IKInna Karpenko
Inna Karpenko
ALAnastasiya Lipatova
Anastasiya Lipatova
OIOlga Ivanova
Olga Ivanova
IFIrina T. Fedyakina
Irina T. Fedyakina
Alexander V. IvanovAlexander V. Ivanov
Alexander V. Ivanov
Changes in metabolic pathways are often associated with the development of various pathologies including cancer, inflammatory diseases, obesity and metabolic syndrome. Identification of the particular metabolic events that are dysregulated may yield strategies for pharmacologic intervention. However, such studies are hampered by the use of classic cell media that do not reflect the metabolite composition that exists in blood plasma and which cause non-physiological adaptations in cultured cells. In recent years two groups presented media that aim to reflect the composition of human plasma, namely human plasma-like medium (HPLM) and Plasmax. Here we describe that, in four different mammalian cell lines, Plasmax enhances mitochondrial respiration. This is associated with the formation of vast mitochondrial networks and enhanced production of reactive oxygen species (ROS). Interestingly, cells cultivated in Plasmax displayed significantly less lysosomes than when any standard media were used. Finally, cells cultivated in Plasmax support replication of various RNA viruses, such as hepatitis C virus (HCV) influenza A virus (IAV), severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) and several others, albeit at lower levels and with delayed kinetics. In conclusion, studies of metabolism in the context of viral infections, especially those concerning mitochondria, lysosomes, or redox systems, should be performed in Plasmax medium.

1 May 2007 in Bioorganic & Medicinal Chemistry
Verified
Journal Article
Closed access
SBSvetlana Bureeva
Svetlana Bureeva
JAJulian Andia-Pravdivy
Julian Andia-Pravdivy
ASAndrey Symon
Andrey Symon
ABAnna Bichucher
Anna Bichucher
VMVera Moskaleva
Vera Moskaleva
AKAlexander Kaplun
Alexander Kaplun

23 November 2018 in Molecules
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Journal Article
Open access
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AKAnastasia Khandazhinskaya
Anastasia Khandazhinskaya
LALiudmila Alexandrova
Liudmila Alexandrova
EMElena Matyugina
Elena Matyugina
PSPavel Solyev
Pavel Solyev
OEOlga Vladimir Efremenkova
Olga Vladimir Efremenkova
Katherine Seley-RadtkeKatherine Seley-Radtke
Katherine Seley-Radtke
A series of novel 5′-norcarbocyclic derivatives of 5-alkoxymethyl or 5-alkyltriazolyl-methyl uracil were synthesized and the activity of the compounds evaluated against both Gram-positive and Gram-negative bacteria. The growth of Mycobacterium smegmatis was completely inhibited by the most active compounds at a MIC99 of 67 μg/mL (mc2155) and a MIC99 of 6.7–67 μg/mL (VKPM Ac 1339). Several compounds also showed the ability to inhibit the growth of attenuated strains of Mycobacterium tuberculosis ATCC 25177 (MIC99 28–61 μg/mL) and Mycobacterium bovis ATCC 35737 (MIC99 50–60 μg/mL), as well as two virulent strains of M. tuberculosis; a laboratory strain H37Rv (MIC99 20–50 μg/mL) and a clinical strain with multiple drug resistance MS-115 (MIC99 20–50 μg/mL). Transmission electron microscopy (TEM) evaluation of M. tuberculosis H37Rv bacterial cells treated with one of the compounds demonstrated destruction of the bacterial cell wall, suggesting that the mechanism of action for these compounds may be related to their interactions with bacteria cell walls.

1 August 2012 in Biochimie
Verified
Journal Article
Closed access
JIJulia L. Ivanova
Julia L. Ivanova
EEEvelina F. Edelweiss
Evelina F. Edelweiss
OLOlga G. Leonova
Olga G. Leonova
TBTaras G. Balandin
Taras G. Balandin
VPVladimir Popenko
Vladimir Popenko
SDSergey Deyev
Sergey Deyev