Shabnam Mohammadi

Dr. Shabnam Mohammadi

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 November 2016 in Proceedings Of The Royal Society B-Biological Sciences
Verified
Journal Article
Open access
SMShabnam Mohammadi
Shabnam Mohammadi
ZGZachariah Gompert
Zachariah Gompert
JGJonathan Gonzalez
Jonathan Gonzalez
HTHirohiko Takeuchi
Hirohiko Takeuchi
AMAkira Mori
Akira Mori
ASAlan Savitzky
Alan Savitzky
Toads are chemically defended by bufadienolides, a class of cardiotonic steroids that exert toxic effects by binding to and disabling the Na+/K+-ATPases of cell membranes. Some predators, including a number of snakes, have evolved resistance to the toxic effects of bufadienolides and prey regularly on toads. Resistance in snakes to the acute effects of these toxins is conferred by at least two amino acid substitutions in the cardiotonic steroid binding pocket of the Na+/K+-ATPase. We surveyed 100 species of snakes from a broad phylogenetic range for the presence or absence of resistance-conferring mutations. We found that such mutations occur in a much wider range of taxa than previously believed. Although all sequenced species known to consume toads exhibited the resistance mutations, many of the species possessing the mutations do not feed on toads, much less specialize on that food source. This suggests that either there is little performance cost associated with these mutations or they provide an unknown benefit. Furthermore, the distribution of the mutation among major clades of advanced snakes suggests that the origin of the mutation reflects evolutionary retention more than dietary constraint.

21 April 2021 in Current Biology
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Journal Article
Closed access
SMShabnam Mohammadi
Shabnam Mohammadi
LYLu Yang
Lu Yang
AHArbel Harpak
Arbel Harpak
SHSantiago Herrera-Álvarez
Santiago Herrera-Álvarez
MRMaría del Pilar Rodríguez-Ordoñez
María del Pilar Rodríguez-Ordoñez
PAPeter Andolfatto
Peter Andolfatto

16 August 2022 in PLOS Genetics
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Journal Article
Open access
PDF file
SMShabnam Mohammadi
Shabnam Mohammadi
SHSantiago Herrera-Álvarez
Santiago Herrera-Álvarez
LYLu Yang
Lu Yang
MRMaría del Pilar Rodríguez-Ordoñez
María del Pilar Rodríguez-Ordoñez
KZKaren Zhang
Karen Zhang
PAPeter Andolfatto
Peter Andolfatto
A growing body of theoretical and experimental evidence suggests that intramolecular epistasis is a major determinant of rates and patterns of protein evolution and imposes a substantial constraint on the evolution of novel protein functions. Here, we examine the role of intramolecular epistasis in the recurrent evolution of resistance to cardiotonic steroids (CTS) across tetrapods, which occurs via specific amino acid substitutions to the α-subunit family of Na,K-ATPases (ATP1A). After identifying a series of recurrent substitutions at two key sites of ATP1A that are predicted to confer CTS resistance in diverse tetrapods, we then performed protein engineering experiments to test the functional consequences of introducing these substitutions onto divergent species backgrounds. In line with previous results, we find that substitutions at these sites can have substantial background-dependent effects on CTS resistance. Globally, however, these substitutions also have pleiotropic effects that are consistent with additive rather than background-dependent effects. Moreover, the magnitude of a substitution’s effect on activity does not depend on the overall extent of ATP1A sequence divergence between species. Our results suggest that epistatic constraints on the evolution of CTS-resistant forms of Na,K-ATPase likely depend on a small number of sites, with little dependence on overall levels of protein divergence. We propose that dependence on a limited number sites may account for the observation of convergent CTS resistance substitutions observed among taxa with highly divergent Na,K-ATPases (See S1 Text for Spanish translation).

4 December 2024 in Open Biology
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Journal Article
Open access
JLJana Löptien
Jana Löptien
SVSidney Vesting
Sidney Vesting
SDSusanne Dobler
Susanne Dobler
SMShabnam Mohammadi
Shabnam Mohammadi
Protein quantification is an important tool for a wide range of biological applications. The most common methods include the Lowry, bicinchoninic acid (BCA) and Coomassie Bradford assays. Despite their wide applicability, the mechanisms of action imply that these methods may not be ideal for large transmembrane proteins due to the proteins’ integration in the plasma membrane. Here, we investigate this problem by assessing the efficacy and applicability of these three common protein quantification methods on a candidate transmembrane protein: Na, K-ATPase (NKA). We compared these methods with an ELISA, which we newly developed and describe here for the quantification of NKA. The use of a relative standard curve allows this ELISA to be easily adapted to other proteins and across the animal kingdom. Our results revealed that the three conventional methods significantly overestimate the concentration of NKA compared with the ELISA. This is due to the samples containing a heterogeneous mix of proteins, including a significant amount of non-target proteins. Further, by applying the protein concentrations determined by the different methods to in vitro assays, we found that variation in the resulting data was consistently low when the assay reactions were prepared based on concentrations determined from the ELISA.

7 September 2022 in Royal Society Open Science
Verified
Journal Article
Open access
SMShabnam Mohammadi
Shabnam Mohammadi
LYLu Yang
Lu Yang
MBMatthew Bulbert
Matthew Bulbert
HRHannah M Rowland
Hannah M Rowland
Predator–prey interactions have long served as models for the investigation of adaptation and fitness in natural environments. Anti-predator defences such as mimicry and camouflage provide some of the best examples of evolution. Predators, in turn, have evolved sensory systems, cognitive abilities and physiological resistance to prey defences. In contrast to prey defences which have been reviewed extensively, the evolution of predator counter-strategies has received less attention. To gain a comprehensive view of how prey defences can influence the evolution of predator counter-strategies, it is essential to investigate how and when selection can operate. In this review we evaluate how predators overcome prey defences during (i) encounter, (ii) detection, (iii) identification, (iv) approach, (v) subjugation, and (vi) consumption. We focus on prey that are protected by cardiotonic steroids (CTS)—defensive compounds that are found in a wide range of taxa, and that have a specific physiological target. In this system, coevolution is well characterized between specialist insect herbivores and their host plants but evidence for coevolution between CTS-defended prey and their predators has received less attention. Using the predation sequence framework, we organize 574 studies reporting predators overcoming CTS defences, integrate these counter-strategies across biological levels of organization, and discuss the costs and benefits of attacking CTS-defended prey. We show that distinct lineages of predators have evolved dissecting behaviour, changes in perception of risk and of taste perception, and target-site insensitivity. We draw attention to biochemical, hormonal and microbiological strategies that have yet to be investigated as predator counter-adaptations to CTS defences. We show that the predation sequence framework will be useful for organizing future studies of chemically mediated systems and coevolution.

1 May 2016 in Toxicon
Verified
Journal Article
Closed access
SMShabnam Mohammadi
Shabnam Mohammadi
EBEdmund D. Brodie
Edmund D. Brodie
LNLorin A. Neuman-Lee
Lorin A. Neuman-Lee
ASAlan H. Savitzky
Alan H. Savitzky