Brown croaker (Miichthys miiuy) is an economically, ecologically, and culturally important species in the East China Sea (ECS); however, populations of M. miiuy have declined in recent years due to climate change and high fishing intensity. Our limited understanding of wild M. miiuy’s migratory life history hampers effective population conservation. To meet this need, and to elucidate the migratory life history of wild M. miiuy, we quantified the elemental composition of otolith samples using laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). This approach, combined with analysis of otolith microstructure, was used to evaluate the feasibility of using the Mg:Ca of otoliths chemical clock for M. miiuy. Using cluster analysis alongside bivariate time series analysis, we identified natal sources and reconstructed migratory histories. The results showed that consistent, periodic fluctuation of Mg:Ca ratios in otolith profiles can be used as a chemical index to indicate the age and life history stage of M. miiuy. Natal sources of M. miiuy originated from three distinct water environments: estuary (14.2%), coastal mixed waters (57.3%), and coastal reef waters (28.5%). A diverse migratory life history of M. miiuy was observed based on Sr:Ba thresholds, and ultimately, we identified four migratory life histories of the species, including an estuary–coastal migratory type, a coastal resident type, a coastal–offshore migratory type and an estuary–coastal–offshore migratory type. This study provides a scientific basis for the protection of key habitats and seasonal management of M. miiuy in the ECS.

Life-history plasticity allows fishes to exploit heterogeneous freshwater networks, and proactive habitat selection enhances their capacity to cope with climatic and human-induced stressors. Coilia brachygnathus, long regarded as a freshwater resident, nevertheless has a poorly understood habitat use and selection. We reconstructed habitat use of C. brachygnathus across the middle-lower Yangtze by coupling water ⁸⁷Sr/⁸⁶Sr baselines with otolith ⁸⁷Sr/⁸⁶Sr transects. We used 60 water samples, compiled published datasets, and measured additional water samples from the mainstem, major tributaries, and connected lakes. In situ ⁸⁷Sr/⁸⁶Sr profiles were smoothed with generalized additive models, revealing significant within-profile variation for all fish. Two modes emerged: (i) residents, whose otolith values remained within local water ranges, consistent with limited movement; and (ii) migrants, whose profiles departed from local baselines, indicating exchanges among lakes, tributaries, and the mainstem. Several fish captured at Anqing and Zhenjiang possess Poyang-like core signatures that declined to mainstem values, while bidirectional shifts were common in the Dongting-Xiang system. These results overturn the residency paradigm, demonstrate flexible partial migration, and indicate proactive habitat selection in the face of environmental change, thereby supporting management that maintains river–lake connectivity and quantifies lake contributions to mainstem stocks.