The clam Meretrix meretrix (Linnaeus, 1758) is a commercially significant bivalve species widely distributed along China’s coast. To investigate the differences among geoducks from different geographic populations, this study investigated the geographical variations in morphology and key physiological traits among three populations spanning a latitudinal gradient: Liaoning Dandong (north), Jiangsu Rudong (center), and Guangxi Qinzhou (south). We analyzed nine morphological traits and measured physiological indicators—including filtration rate, feeding rate, oxygen consumption, ammonia excretion, and burrowing behavior—at two temperatures (18 °C and 20 °C). The results revealed significant morphological differentiation among the populations. Physiologically, the Guangxi population demonstrated superior adaptation to warmer conditions, exhibiting the highest feeding and metabolic rates at 20 °C. In contrast, the Liaoning population performed better at the lower temperature of 18 °C, while the Jiangsu population showed intermediate characteristics. Furthermore, burrowing capacity varied significantly, with the southern population having the highest burrowing rate. These findings demonstrate clear population-specific adaptations to local thermal environments, likely driven by long-term acclimatization. This study provides a crucial scientific basis for the conservation of genetic resources and informs regionalized aquaculture strategies for M. meretrix, emphasizing the importance of selecting locally adapted populations for cultivation.

This study examined the sediment microbial communities at 12 stations within the Meretrix meretrix farming area in Rudong, Jiangsu Province, utilising high-throughput sequencing. It elucidates the ecological relationships between the sediment microbial communities and the primary physical and chemical factors influencing the farming water and sediment. The results indicated that the microbial communities comprised 55 phyla. The Shannon index ranged from a minimum of 8.97 to a maximum of 9.96, while the Simpson index varied from 0.996 to 0.997, indicating a uniform species distribution. β diversity analysis revealed significant spatial diversity among the communities. Dominant bacterial groups included Proteobacteria (25.2–38%) and Desulfobacterota (10.4–14.4%), with Desulfobacterota reaching a peak of 14.4% at tidal creek station S2, reflecting the sulphate reduction process associated with organic pollution input. At the genus level, Woesia (9.15–17.16%), Desulfobacterota, and Subgroup_22 were identified as core functional bacteria. Redundancy analysis indicated that phosphate and nitrate were the primary drivers of community variation, accounting for a cumulative interpretation rate of 43.2%. Spearman correlation analysis confirmed that fine-grained sediments were more likely to store organic matter, significantly promoting the colonisation of AQS1 (p < 0.05) and Cohaesibacter (p < 0.05), while inhibiting Puniceispirillales (p < 0.01). An alkaline environment positively selects for sulphur-cycling bacteria, such as Desulfatiglans (p < 0.05). This study provides technical support for the regulation of sediment environments and the promotion of healthy clam culture practices.