Francesco Simone Ruggeri

Dr. Francesco Simone Ruggeri

Department of Chemistry, Centre for Misfolding Diseases, University of Cambridge, Cambridge CB2 1EW, UK
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 April 2018 in Cell
Verified
Journal Article
Open access
SQSeema Qamar
Seema Qamar
GWGuoZhen Wang
GuoZhen Wang
SRSuzanne J. Randle
Suzanne J. Randle
FRFrancesco Simone Ruggeri
Francesco Simone Ruggeri
JVJuan A. Varela
Juan A. Varela
PGPeter St George-Hyslop
Peter St George-Hyslop
Reversible phase separation underpins the role of FUS in ribonucleoprotein granules and other membrane-free organelles and is, in part, driven by the intrinsically disordered low-complexity (LC) domain of FUS. Here, we report that cooperative cation-π interactions between tyrosines in the LC domain and arginines in structured C-terminal domains also contribute to phase separation. These interactions are modulated by post-translational arginine methylation, wherein arginine hypomethylation strongly promotes phase separation and gelation. Indeed, significant hypomethylation, which occurs in FUS-associated frontotemporal lobar degeneration (FTLD), induces FUS condensation into stable intermolecular β-sheet-rich hydrogels that disrupt RNP granule function and impair new protein synthesis in neuron terminals. We show that transportin acts as a physiological molecular chaperone of FUS in neuron terminals, reducing phase separation and gelation of methylated and hypomethylated FUS and rescuing protein synthesis. These results demonstrate how FUS condensation is physiologically regulated and how perturbations in these mechanisms can lead to disease.

28 July 2015 in Nature Communications
Verified
Journal Article
Open access
PDF file
FRFrancesco Simone Ruggeri
Francesco Simone Ruggeri
GLGiovanni Longo
Giovanni Longo
SFSerena Faggiano
Serena Faggiano
ELEwelina Lipiec
Ewelina Lipiec
APAnnalisa Pastore
Annalisa Pastore
GDG. Dietler
G. Dietler
Amyloids are insoluble protein fibrillar aggregates. The importance of characterizing their aggregation has steadily increased because of their link to human diseases and material science applications. In particular, misfolding and aggregation of the Josephin domain of ataxin-3 is implicated in spinocerebellar ataxia-3. Infrared nanospectroscopy, simultaneously exploiting atomic force microscopy and infrared spectroscopy, can characterize at the nanoscale the conformational rearrangements of proteins during their aggregation. Here we demonstrate that we can individually characterize the oligomeric and fibrillar species formed along the amyloid aggregation. We describe their secondary structure, monitoring at the nanoscale an α-to-β transition, and couple these studies with an independent measurement of the evolution of their intrinsic stiffness. These results suggest that the aggregation of Josephin proceeds from the monomer state to the formation of spheroidal intermediates with a native structure. Only successively, these intermediates evolve into misfolded aggregates and into the final fibrils.

24 December 2021 in Science
Verified
Journal Article
Closed access
TDTiarnan A. S. Doherty
Tiarnan A. S. Doherty
SNSatyawan Nagane
Satyawan Nagane
DKDominik J. Kubicki
Dominik J. Kubicki
YJYoung-Kwang Jung
Young-Kwang Jung
DJDuncan N. Johnstone
Duncan N. Johnstone
SSSamuel D. Stranks
Samuel D. Stranks
Stable but not quite cubic: The black, photoactive phase of formamidinium (FA) perovskites, which is usually stabilized by cation alloying to avoid the formation of inactive hexagonal phases, is assumed to be cubic. High-resolution microscopy studies by Doherty et al . using nanoscale probes revealed that these FA-rich phases are not cubic but rather undergo slight tilting (by two degrees) of the octahedra. Black phases can have localized regions of hexagonal phases that nucleate degradation. Surface-bound ethylenediaminetetraacetic acid stabilized the tilted phase of pure FA lead triiodide against environmental degradation. —PDS

7 May 2018 in Nature Chemistry
Verified
Journal Article
Closed access
PDF file
JHJohnny Habchi
Johnny Habchi
Sean ChiaSean Chia
Sean Chia
CGCéline Galvagnion
Céline Galvagnion
TMThomas C.T. Michaels
Thomas C.T. Michaels
MBMathias M. J. Bellaiche
Mathias M. J. Bellaiche
Michele VendruscoloMichele Vendruscolo
Michele Vendruscolo

20 September 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
DEDerya Emin
Derya Emin
YZYu P. Zhang
Yu P. Zhang
ELEvgeniia Lobanova
Evgeniia Lobanova
AMAlyssa Miller
Alyssa Miller
XLXuecong Li
Xuecong Li
DKDavid Klenerman
David Klenerman
Soluble α-synuclein aggregates varying in size, structure, and morphology have been closely linked to neuronal death in Parkinson’s disease. However, the heterogeneity of different co-existing aggregate species makes it hard to isolate and study their individual toxic properties. Here, we show a reliable non-perturbative method to separate a heterogeneous mixture of protein aggregates by size. We find that aggregates of wild-type α-synuclein smaller than 200 nm in length, formed during an in vitro aggregation reaction, cause inflammation and permeabilization of single-liposome membranes and that larger aggregates are less toxic. Studying soluble aggregates extracted from post-mortem human brains also reveals that these aggregates are similar in size and structure to the smaller aggregates formed in aggregation reactions in the test tube. Furthermore, we find that the soluble aggregates present in Parkinson’s disease brains are smaller, largely less than 100 nm, and more inflammatory compared to the larger aggregates present in control brains. This study suggests that the small non-fibrillar α-synuclein aggregates are the critical species driving neuroinflammation and disease progression.

7 August 2023 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
YSYi Shen
Yi Shen
ACAnqi Chen
Anqi Chen
WWWenyun Wang
Wenyun Wang
YSYinan Shen
Yinan Shen
FRFrancesco Simone Ruggeri
Francesco Simone Ruggeri
TKTuomas P. J. Knowles
Tuomas P. J. Knowles
A wide range of macromolecules can undergo phase separation, forming biomolecular condensates in living cells. These membraneless organelles are typically highly dynamic, formed reversibly, and carry out essential functions in biological systems. Crucially, however, a further liquid-to-solid transition of the condensates can lead to irreversible pathological aggregation and cellular dysfunction associated with the onset and development of neurodegenerative diseases. Despite the importance of this liquid-to-solid transition of proteins, the mechanism by which it is initiated in normally functional condensates is unknown. Here we show, by measuring the changes in structure, dynamics, and mechanics in time and space, that single-component FUS condensates do not uniformly convert to a solid gel, but rather that liquid and gel phases coexist simultaneously within the same condensate, resulting in highly inhomogeneous structures. Furthermore, our results show that this transition originates at the interface between the condensate and the dilute continuous phase, and once initiated, the gelation process propagates toward the center of the condensate. To probe such spatially inhomogeneous rheology during condensate aging, we use a combination of established micropipette aspiration experiments together with two optical techniques, spatial dynamic mapping and reflective confocal dynamic speckle microscopy. These results reveal the importance of the spatiotemporal dimension of the liquid-to-solid transition and highlight the interface of biomolecular condensates as a critical element in driving pathological protein aggregation.