Fluorescence fluctuation spectroscopy provides information about protein interactions in the intercellular environment from naturally occurring equilibrium fluctuations. We determine the molecular brightness of fluorescent proteins from the fluctuations by analyzing the photon counting histogram (PCH) or its moments and demonstrate the use of molecular brightness in probing the oligomerization state of proteins. We report fluorescence fluctuation measurements of enhanced GFP (EGFP) in cells up to concentrations of 10 μM by using an improved PCH theory. The molecular brightness of EGFP is constant in the concentration range studied. The brightness of a tandem EGFP construct, which carries two fluorophores, increases by a factor of two compared with EGFP alone, demonstrating the sensitivity of molecular brightness as a probe for protein complex formation. Oligomerization of nuclear receptors plays a crucial role in the regulation of gene expression. We probe the oligomerization state of the testicular receptor 4 and the ligand-binding domains of retinoid X receptor and retinoic acid receptor by observing molecular brightness changes as a function of protein concentration. The large concentration range accessible by experiment allows us to perform titration experiments on EGFP fusion proteins. An increase in the molecular brightness with protein concentration indicates the formation of homocomplexes. We observe the formation of homodimers of retinoid X receptor ligand binding domain upon addition of ligand. Resolving protein interactions in a cell is an important step in understanding cellular function on a molecular level. Brightness analysis promises to develop into an important tool for determining protein complex formation in cells.

We report direct measurement of the center-of-mass diffusion coefficient, D, of uncharged flexible linear chains adsorbed at the solid−liquid interface at dilute surface coverage. We find D ∼ N^-3/2 (N is degree of polymerization) when N was varied by more than an order of magnitude (N = 48, 113, 244, 456, and 693) and the scatter of the data was low. The experimental system was poly(ethylene glycol), PEG, adsorbed from dilute aqueous solution onto a self-assembled hydrophobic monolayer, condensed octadecyltriethoxysilane. The method of measurement was fluorescence correlation spectroscopy of a rhodamine green derivative dye that was end-attached to one sole end of the adsorbed PEG chains. The observed scaling implies the diffusion time τ ∼ N³ if R_g ∼ N^3/4 as expected for a chain in good solvent in two dimensions (R_g is the radius of gyration), but a variety of other theoretical approaches to describe the dynamical scaling are also plausible. The multiplicity of plausible dynamical transport scenarios is compounded by the fact that polymer diffusion is sensitive to chain conformation on the surface which is not directly observable. Various theoretical scenarios are explored, and the need for new experiments, theory, and computer simulation studies to allow definitive interpretation of this observation of simple and clean fractional power law scaling is emphasized.