Samer Shamshad

Samer Shamshad

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 October 2024 in Pathogens
Verified
Journal Article
Open access
PDF file
PSPriyansha Raj Sinha
Priyansha Raj Sinha
SHShubhada Hegde
Shubhada Hegde
RMRuchika Mittal
Ruchika Mittal
CJChikkamagaluru Chandrashekhar Jagat
Chikkamagaluru Chandrashekhar Jagat
UGUllas Gowda
Ullas Gowda
DHDivakar Hemadri
Divakar Hemadri
The bluetongue virus (BTV), transmitted by biting midges, poses a significant threat to livestock globally. This orbivirus induces bluetongue disease, leading to substantial economic losses in the agricultural sector. The current control measures have limitations, necessitating the development of novel, efficient vaccines. In this study, an immunoinformatics approach is employed to design a multi-epitope subunit vaccine for Ovis aries targeting six BTV serotypes. Focusing on the VP2 capsid protein, the vaccine incorporates B-cell, helper-T lymphocytes (HTL), and cytotoxic T-cell lymphocytes (CTL) epitopes. Molecular docking reveals stable interactions with TLR2 and TLR4 receptors, suggesting the stability of the complex, indicating the potential viability of the multi-epitope vaccine. The computational approach offers a rapid and tailored strategy for vaccine development, highlighting potential efficacy and safety against BTV outbreaks. This work contributes to understanding BTV and presents a promising avenue for effective control.


26 November 2025 in Preprints.org
Verified
Preprint
Open access
PDF file
Gopukumar S.TGopukumar S.T
Gopukumar S.T
MSMadhumita Saha
Madhumita Saha
TSTanveen Kaur Soni
Tanveen Kaur Soni
SSSamer Shamshad
Samer Shamshad
STSunil Tadakod
Sunil Tadakod
UDUddalak Das
Uddalak Das
Autism Spectrum Disorder (ASD) is a genetically heterogeneous neurodevelopmental condition driven by rare de novo variants, copy number variations, and polygenic risk. SFARI-curated genes show high mutational constraint and enriched expression in cortical neurons and glia. This review highlights recent advances in CRISPR-based functional genomics using human pluripotent stem cells and induced pluripotent stem cells differentiated into neural progenitors, excitatory and inhibitory neurons, astrocytes, microglia, and brain organoids. CRISPR modalities including knockouts, CRISPRi and CRISPRa, base and prime editing, and Cas13 enable pooled and arrayed screens with high coverage at low multiplicity of infection. Integration of multimodal readouts such as Perturb-seq, single-cell and spatial transcriptomics, proximity labeling proteomics, and functional assays including microelectrode arrays and calcium imaging provides system-level insights into ASD gene function. Computational frameworks like MIMOSCA and SCEPTRE facilitate network reconstruction and pseudo-time inference. Case studies reveal Wnt and BAF complex dysregulation, microglial pruning deficits, and non-cell autonomous effects. Translational approaches target haplo-insufficient genes such as CHD8 and SCN2A using AAV or antisense oligonucleotides supported by isogenic iPSC models. Remaining challenges include model immaturity and scalability, while future directions focus on spatial perturb-omics, AI-driven causal inference, and standardized biobanks for precision ASD therapeutics.

1 September 2023 in Journal of Pure and Applied Microbiology
Verified
Journal Article
Open access
SPSudipta Patra
Sudipta Patra
MSMuneera M. Sahib
Muneera M. Sahib
GSG SHANMUGAM
G SHANMUGAM
SSSomy Skariah
Somy Skariah
SSSamer Shamshad
Samer Shamshad
RSRajeswari Shome
Rajeswari Shome

20 October 2025 in Preprints.org
Verified
Preprint
Open access
PDF file
MSMadhumita Saha
Madhumita Saha
KAKaliyaperumal Anbukkarasi
Kaliyaperumal Anbukkarasi
VJVinny Jasuja
Vinny Jasuja
SSSamer Shamshad
Samer Shamshad
Uddalak DasUddalak Das
Uddalak Das
Biomineralization processes in terrestrial ecosystems facilitate durable carbon dioxide removal (CDR) by transforming atmospheric CO₂ into stable inorganic phases via interconnected biogeochemical pathways. This review elucidates the oxalate–carbonate pathway (OCP), wherein oxalogenic angiosperms biosynthesize calcium oxalate (CaC₂O₄) crystals, metabolized by rhizospheric oxalotrophs through oxalyl-CoA decarboxylase (oxc/frc)-mediated decarboxylation, generating alkalinity and bicarbonate for pedogenic CaCO₃ precipitation. Complementary mechanisms include microbially induced carbonate precipitation (MICP) via ureolysis (ureC), denitrification, sulfate reduction, and cyanobacterial photosynthetic CO₂ drawdown, nucleating calcite polymorphs with extracellular carbonic anhydrase catalysis; phytolith-occluded organic carbon (PhytOC) encapsulation in amorphous SiO₂ matrices exhibiting millennial recalcitrance; and enhanced rock weathering (ERW) accelerating silicate (e.g., basalt) dissolution to liberate Ca²⁺/Mg²⁺ for secondary carbonates. Empirical δ¹³C, radiocarbon, and clumped isotope (∆₄₇) analyses from iroko and basaltic fig systems quantify sequestration rates of 0.5–5 t CO₂ ha⁻¹ yr⁻¹, with permanence spanning 10³–10⁶ years. Proposed monitoring, reporting, and verification (MRV) frameworks integrate mineralogical speciation, functional metagenomics, and biomarkers to ensure additionality and mitigate risks. Translational strategies—agroforestry, microbial augmentation, ERW integration—harness co-benefits for edaphic fertility and biodiversity, positioning biomineralization as a gigaton-scale CDR paradigm bridging biogenic transience with geological stability.

16 September 2026 in Metabolic Brain Disease
Verified
Journal Article
Closed access
PDF file
Gopukumar S.TGopukumar S.T
Gopukumar S.T
MSMadhumita Saha
Madhumita Saha
TSTanveen Kaur Soni
Tanveen Kaur Soni
EAEid Alatwi
Eid Alatwi
GKGazala Afreen Khan
Gazala Afreen Khan
Uddalak DasUddalak Das
Uddalak Das