Omid Bavi

Dr. Omid Bavi

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Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 May 2019 in Biophysical Reviews
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Journal Article
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MKMona Khafaji
Mona Khafaji
MZMasoud Zamani
Masoud Zamani
MGMortaza Golizadeh
Mortaza Golizadeh
OBOmid Bavi
Omid Bavi

22 June 2016 in Nature Communications
Verified
Journal Article
Open access
NBNavid Bavi
Navid Bavi
DCD. Marien Cortes
D. Marien Cortes
CCCharles D. Cox
Charles D. Cox
PRPaul R. Rohde
Paul R. Rohde
WLWeihong Liu
Weihong Liu
BMBoris Martinac
Boris Martinac
The bacterial mechanosensitive channel MscL gates in response to membrane tension as a result of mechanical force transmitted directly to the channel from the lipid bilayer. MscL represents an excellent model system to study the basic biophysical principles of mechanosensory transduction. However, understanding of the essential structural components that transduce bilayer tension into channel gating remains incomplete. Here using multiple experimental and computational approaches, we demonstrate that the amphipathic N-terminal helix of MscL acts as a crucial structural element during tension-induced gating, both stabilizing the closed state and coupling the channel to the membrane. We propose that this may also represent a common principle in the gating cycle of unrelated mechanosensitive ion channels, allowing the coupling of channel conformation to membrane dynamics.

8 September 2014 in Proceedings of the National Academy of Sciences
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Journal Article
Closed access
NBNavid Bavi
Navid Bavi
YNYoshitaka Nakayama
Yoshitaka Nakayama
OBOmid Bavi
Omid Bavi
CCCharles D. Cox
Charles D. Cox
Qinghua QinQinghua Qin
Qinghua Qin
BMBoris Martinac
Boris Martinac
Significance: Given the extensive use of lipid bilayer reconstitution for the study of mechanosensitive channels, it is imperative to understand the biophysical properties of lipid bilayers. We have theoretically and experimentally proven that the traditional micropipette aspiration method fails to accurately describe these properties. Herein we introduce a superior framework, which combines computational modeling with patch fluorometry for the assessment of bilayer properties. Our results show the limitations of Laplace’s law for estimation of tension within a patch membrane. We also demonstrate, in contrast to the cell-attached configuration, there is a significant difference between the stress developed in the outer and in the inner monolayers of the bilayer in the excised patch configuration. These results are of critical importance for patch-clamp electrophysiology in general.

5 February 2016 in Membranes
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OBOmid Bavi
Omid Bavi
OBOmid Bavi
Omid Bavi
MVManouchehr Vossoughi
Manouchehr Vossoughi
RNReza Naghdabadi
Reza Naghdabadi
YJYousef Jamali
Yousef Jamali
BMBoris Martinac
Boris Martinac
Mechanosensitive (MS) channels are ubiquitous molecular force sensors that respond to a number of different mechanical stimuli including tensile, compressive and shear stress. MS channels are also proposed to be molecular curvature sensors gating in response to bending in their local environment. One of the main mechanisms to functionally study these channels is the patch clamp technique. However, the patch of membrane surveyed using this methodology is far from physiological. Here we use continuum mechanics to probe the question of how curvature, in a standard patch clamp experiment, at different length scales (global and local) affects a model MS channel. Firstly, to increase the accuracy of the Laplace’s equation in tension estimation in a patch membrane and to be able to more precisely describe the transient phenomena happening during patch clamping, we propose a modified Laplace’s equation. Most importantly, we unambiguously show that the global curvature of a patch, which is visible under the microscope during patch clamp experiments, is of negligible energetic consequence for activation of an MS channel in a model membrane. However, the local curvature (RL < 50) and the direction of bending are able to cause considerable changes in the stress distribution through the thickness of the membrane. Not only does local bending, in the order of physiologically relevant curvatures, cause a substantial change in the pressure profile but it also significantly modifies the stress distribution in response to force application. Understanding these stress variations in regions of high local bending is essential for a complete understanding of the effects of curvature on MS channels.

12 November 2019 in Biophysical Reviews
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Journal Article
Closed access
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SJSafura Jokar
Safura Jokar
SKSaeedeh Khazaei
Saeedeh Khazaei
HBHossein Behnammanesh
Hossein Behnammanesh
ASAmir Shamloo
Amir Shamloo
MEMostafa Erfani
Mostafa Erfani
OBOmid Bavi
Omid Bavi

23 November 2021 in Biophysical Reviews
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Journal Article
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MMMohammad M. Mohammadi
Mohammad M. Mohammadi
OBOmid Bavi
Omid Bavi