Soil salinization severely limits global agricultural sustainability, particularly across the saline–alkaline landscapes of the Qinghai–Tibet Plateau. We examined how potassium fulvate (PF) modulates oat (Avena sativa L.) performance, soil chemistry, and rhizospheric microbiota in the saline–alkaline soils of the Qaidam Basin. PF markedly boosted shoot and root biomass, with the greatest response observed at 150 kg hm⁻². At the same time, it enhanced soil fertility by increasing organic matter, nitrate-N, ammonium-N, and available potassium, and improved ionic balance by lowering Na⁺ concentrations and the sodium adsorption ratio (SAR), while increasing Ca²⁺ levels and soil moisture content. Under the high-dose treatment (F2), endogenous fungal contributions declined sharply, exogenous replacements increased, and fungal α-diversity fell; multivariate ordinations confirmed that PF reshaped both bacterial and fungal communities, with fungi exhibiting the stronger response. We integrated three machine learning algorithms—least absolute shrinkage and selection operator (LASSO), Random Forest (RF), and eXtreme Gradient Boosting (XGBoost)—to minimize the bias inherent in any single method. We identified microbial β-diversity, organic matter, and Na⁺ and Ca²⁺ concentrations as the most robust predictors of the Soil Salinization and Alkalization Index (SSAI). Structural equation modeling further showed that PF mitigates salinity chiefly by improving soil physicochemical properties (path coefficient = −0.77; p < 0.001), with microbial assemblages acting as key intermediaries. These findings provide compelling theoretical and empirical support for deploying PF to rehabilitate saline–alkaline soils in alpine environments and offer practical guidance for sustainable land management in the Qaidam Basin.

The Qinghai–Tibet Plateau, a globally significant ecological barrier and a core pastoral region, is persistently constrained by cold and arid climatic conditions, nutrient poor soils, and progressive grassland degradation. These challenges necessitate maintaining forage productivity while enhancing ecological stability. Medicago sativa L., valued for its high nutritional quality and capacity for biological nitrogen fixation, has been widely incorporated into regional grassland systems. Rhizobial inoculation, as an environmentally sustainable agronomic practice, is regarded as an effective approach to improving nutrient use efficiency and promoting ecological restoration; however, its underlying mechanisms in cold and arid environments remain insufficiently understood. This study established a field experiment in Delingha, Qaidam Basin, using the cultivar ‘Beilin 201’. Treatments included an uninoculated control (CK) and four rhizobial seed coating rates: E1 (0.75 g·m⁻²), E2 (1.50 g·m⁻²), E3 (2.24 g·m⁻²), and E4 (3.00 g·m⁻²). The effects on yield, rhizosphere soil physicochemical properties, bacterial community structure, and molecular ecological networks were systematically evaluated. The composite microbial inoculant maintained Medicago sativa L. yield, with only modest and non-significant increases in some treatments. In contrast, soil organic matter increased significantly with application rate (p < 0.001), suggesting a stronger short-term effect on soil properties than on yield. Although network vulnerability was lowest in E4, the differences among treatments were not statistically significant. Mixed effects modeling showed that soil factors (74.79%) and microbial factors (25.12%) jointly influenced yield variation. Structural equation modeling further revealed that microbial factors exerted a positive direct effect on yield (0.3), whereas soil factors exhibited a stronger direct effect (0.57), with inoculation rate primarily influencing yield indirectly through soil mediated pathways. This study elucidates the ecological functions and regulatory mechanisms of rhizobial formulations in high elevation dryland ecosystems and provides both theoretical support and practical guidance for the rational application of microbial fertilizers and the sustainable management of forage systems on the Qinghai–Tibet Plateau.