Incomplete lineage sorting and hybridization are two major nonexclusive causes of haplotype sharing between species. Distinguishing between these two processes is notoriously difficult as they can generate similar genetic signatures. Previous studies revealed that the mitochondrial DNA (mtDNA) differentiation between two East Asian long-tailed tits (Aegithalos bonvaloti and A. fuliginosus) was extremely low, even lower than intraspecific differentiation in some other long-tailed tits. Using a combination of multilocus and coalescent analyses, we explored the causes of the anomalous lack of mtDNA differentiation between the two species.

This study examined the effect of habitat types and ontogenetic stages on the diet shift of Coreius guichenoti (Sauvage and Dabry de Thiersant, 1874), a critically endangered fish species. Based on the stable isotope analysis method, the following was explored: the variations in δ¹³C and δ¹⁵N values, isotopic niche width and four basal food sources (Mollusks, Macrocrustaceans, Aquatic insect larvae and particulate organic matters (POMs)) among three essential habitat types (the spawning ground, natural riverine feeding and nursery area, and Three Gorges Reservoir area) and between two ontogenetic stages (immature and fully mature stages). A diet shift associated with habitat type changes was observed, but there were no obvious differences in diet composition between the two ontogenetic stages. Dietary plasticity and a preference for specific foods were the important determinants of feeding behavior through the life history of this species. POM was important for the survival of this species in the resource-limited spawning ground, but this species fed more heavily on higher-order consumers in resource-abundant areas. This study highlights the importance of maintaining free connectivity among different habitats (particularly spawning grounds) to ensure the long-term sustainability of potamodromous fish species as well as the full investigation of all types of critical habitats for understanding the trophic ecology of a single fish species.

Fish gut microbiota were potentially influenced by habitat changes. However, the fish gut has been shown to have a filtering effect on habitat microorganisms. Here, we hypothesized that the filtering of fish gut microbiota could counteract the effect of dam construction on the gut microbiota composition. To test this hypothesis, we collected water and Rhinogobio cylindricus individuals from four sampling sites located upstream of the Three Gorges Dam (TGD) and analyzed the microbiota composition in the water samples (n = 48) and R. cylindricus gut samples (n = 89) by high-throughput sequencing of the 16S rRNA gene. A total of 6,772,720 (49,435.91 ± 3762.80) high-quality sequences were obtained from 137 samples. The microbiota in the water environment was significantly more diverse than that in the gut of R. cylindricus. The β-diversity of microbiota in the water was significantly lower than that in the gut of R. cylindricus. The water microbiota composition varied greatly according to the distribution of the sampling sites upstream of the TGD, but the gut microbiota of R. cylindricus did not show the same pattern. Rather, the gut microbiota of R. cylindricus were not significantly affected by the TGD. This consistency in the internal tract of R. cylindricus is presumedly a result of a filtering effect on the water microorganisms. Our study furthers our understanding of the stabilization mechanism of the gut microbiota composition of fish and the impact of dams on river ecosystems.