Athanasios Papanikolaou

Mr. Athanasios Papanikolaou


Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 December 2025 in Sensors
Verified
Journal Article
Open access
PDF file
APAthanasios Papanikolaou
Athanasios Papanikolaou
ATAthanasios Tziouvaras
Athanasios Tziouvaras
GFGeorge Floros
George Floros
Apostolos XenakisApostolos Xenakis
Apostolos Xenakis
FBFabio Bonsignorio
Fabio Bonsignorio
The early detection of plant diseases is critical to improving agricultural productivity and ensuring food security. However, conventional centralized deep learning approaches are often unsuitable for large-scale agricultural deployments, as they rely on continuous data transmission to cloud servers and require high computational resources that are impractical for Internet of Things (IoT)-based field environments. In this article, we present a distributed deep learning framework based on Federated Learning (FL) for the diagnosis of plant diseases in IoT sensor networks. The proposed architecture integrates multiple IoT nodes and an edge computing node that collaboratively train an EfficientNet B0 model using the Federated Averaging (FedAvg) algorithm without transferring local data. Two training pipelines are evaluated: a standard single-model pipeline and a hierarchical pipeline that combines a crop classifier with crop-specific disease models. Experimental results on a multicrop leaf image dataset under realistic augmentation scenarios demonstrate that the hierarchical FL approach improves per-crop classification accuracy and robustness to environmental variations, while the standard pipeline offers lower latency and energy consumption.

19 March 2025 in bioRxiv
Verified
Preprint
Open access
PDF file
APAthanasios Papanikolaou
Athanasios Papanikolaou
VSVladimir Sivtsov
Vladimir Sivtsov
EZENRICA ZEREIK
ENRICA ZEREIK
EREliana Ruggiero
Eliana Ruggiero
CBChiara Bonini
Chiara Bonini
FBFabio Bonsignorio
Fabio Bonsignorio
Objective: To develop a deep learning model capable of predicting epitope peptides recognized by specific CDR3 (Complementarity-Determining Region 3) sequences of T-cell receptors (TCRs) in the context of Major Histocompatibility Complex (MHC) molecules, addressing the challenges of incomplete datasets and the need for novel sequence generation in adoptive T-cell therapy for cancer. Methods: We implemented a sequence to sequence generative model named “GRIP” (Generative Reconstruction of antIgen Peptides) using a Long Short-Term Memory (LSTM) network with attention mechanisms. The model was trained and validated on publicly available datasets, employing data balancing, label smoothing, and dynamic learning rate scheduling to enhance performance and generalization. Accuracy was assessed at the amino acid level. Results: The model achieved a training accuracy of 97% and a test accuracy of 85% for predicting epitope sequences at the amino acid level. Probabilistic sequence generation allowed GRIP to produce biologically plausible epitope sequences, even for unseen CDR3 inputs. Attention-based interpretability provided insights into the model’s focus on critical sequence elements. The model outperformed existing approaches in handling data imbalance and generalization to novel epitopes. Conclusion: GRIP offers a novel solution to the TCR-epitope binding problem by generating potential epitope sequences instead of matching to known data, addressing a fundamental gap in existing models. This approach has significant implications for personalized immunotherapy, facilitating the design of targeted T-cell therapies for cancer.

8 May 2026 in Robotics and Autonomous Systems
Verified
Journal Article
Closed access
APAthanasios Papanikolaou
Athanasios Papanikolaou
VSVladimir Sivtsov
Vladimir Sivtsov
MAMuslim Alaran
Muslim Alaran
DSDaniil Shkolnik
Daniil Shkolnik
EZEnrica Zereik
Enrica Zereik
FBFabio Bonsignorio
Fabio Bonsignorio

2 September 2026
Verified
Book Chapter
Closed access
PDF file
VSVladimir Sivtsov
Vladimir Sivtsov
APAthanasios Papanikolaou
Athanasios Papanikolaou
IMIvan Markovic
Ivan Markovic
IPIvan Petrovic
Ivan Petrovic
EZENRICA ZEREIK
ENRICA ZEREIK
FBFabio Bonsignorio
Fabio Bonsignorio

2 September 2026
Verified
Book Chapter
Closed access
PDF file
APAthanasios Papanikolaou
Athanasios Papanikolaou
VSVladimir Sivtsov
Vladimir Sivtsov
DSDaniil Shkolnik
Daniil Shkolnik
EZENRICA ZEREIK
ENRICA ZEREIK
IMIvan Markovic
Ivan Markovic
FBFabio Bonsignorio
Fabio Bonsignorio