Funda Yılmaz

Funda Yılmaz


Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 June 2016 in American Journal of Transplantation
Verified
Journal Article
Open access
PDF file
ADA. J. Demetris
A. J. Demetris
CBC. Bellamy
C. Bellamy
SHS. G. Hübscher
S. G. Hübscher
JOJ. O’lEary
J. O’lEary
PRP. S. Randhawa
P. S. Randhawa
YZY. Zen
Y. Zen
The Banff Working Group on Liver Allograft Pathology reviewed and discussed literature evidence regarding antibody‐mediated liver allograft rejection at the 11th (Paris, France, June 5–10, 2011), 12th (Comandatuba, Brazil, August 19–23, 2013), and 13th (Vancouver, British Columbia, Canada, October 5–10, 2015) meetings of the Banff Conference on Allograft Pathology. Discussion continued online. The primary goal was to introduce guidelines and consensus criteria for the diagnosis of liver allograft antibody‐mediated rejection and provide a comprehensive update of all Banff Schema recommendations. Included are new recommendations for complement component 4d tissue staining and interpretation, staging liver allograft fibrosis, and findings related to immunosuppression minimization. In an effort to create a single reference document, previous unchanged criteria are also included.

21 March 2022 in Nature Medicine
Verified
Journal Article
Closed access
PDF file
JLJana Lipkova
Jana Lipkova
TCTiffany Y. Chen
Tiffany Y. Chen
MLMing Y. Lu
Ming Y. Lu
RCRichard J. Chen
Richard J. Chen
MSMaha Shady
Maha Shady
FMFaisal Mahmood
Faisal Mahmood

1 June 2003 in Hepatology
Verified
Journal Article
Open access
PDF file
MSMylène Sebagh
Mylène Sebagh
KRKinan Rifai
Kinan Rifai
CFCyrille Féray
Cyrille Féray
FYFunda Yılmaz
Funda Yılmaz
BFBruno Falissard
Bruno Falissard
MRMichel Reynès
Michel Reynès
The value of late protocol biopsies after liver transplantation remains to be evaluated to highlight the therapeutic policies. The study population was composed of patients who survived with the initial graft and with an available 10–year protocol biopsy (n = 143). The long–term histologic outcome of the graft, particularly the rate of ductopenia in cases with chronic rejection (CR), and Metavir scoring of fibrosis in cases with viral chronic hepatitis (VCH), were assessed. Fibrosis progression (FP) rates were compared over 3 periods (0–5, 5–10, and 0–10 years). At 10 years, histologic abnormalities present in 80% of the patients were not identifiable from liver function tests (LFTs), which were strictly normal in 52% of the patients. Histologic CR occurred in 24% at 10 years, with a mean rate of ductopenia higher at 10 years than at 5 years (49% vs. 34%, P < .001). In cases of VCH, fibrosis worsened, with a median FP rate of 0.20 fibrosis units/year. During the first 5 years, FP was as follows; hepatitis B virus infection was greater than recurrent hepatitis C virus (HCV) infection, which was greater than acquired HCV infection (P = .029). In patients with HCV, FP was higher during the second 5–year period than during the first one (P = .042). In conclusion, given the high prevalence of histologic abnormalities and the lack of sensitivity and specificity of LFTs, late protocol biopsies clearly are justified to adjust treatments, not only in HCV–infected patients in whom FP was fast and not linear, but also in the whole population of recipients.

24 February 2009 in BMC Cancer
Verified
Journal Article
Open access
PDF file
MCMurat Cokakli
Murat Cokakli
EEEsra Erdal
Esra Erdal
DNDeniz Nart
Deniz Nart
FYFunda Yılmaz
Funda Yılmaz
OSOzgul Sagol
Ozgul Sagol
NANese Atabey
Nese Atabey
Background: Caveolin-1 is the main component of caveolae membrane structures and has different roles during tumorigenesis in different cancer types with varying expression profiles, indicating that the role of caveolin-1 varies according to tumor type. In this study, we investigated the role and expression of caveolin-1 in hepatocellular carcinogenesis. Methods: We analyzed the expression of Caveolin-1 in 96 hepatocellular carcinoma (HCC), 29 cirrhosis, 20 normal liver tissues and 9 HCC cell lines by immunostaining and western blotting, respectively. After caveolin-1 was stably transfected to HepG2 and Huh7 cells, the effects of Caveolin-1 on the cellular motility, matrix invasion and anchorage-independent growth were studied. Also, caveolae structure was disrupted in endogenously caveolin expressing cells, SNU 449 and SNU 475 by addition of methyl-β-cyclodextrin and analyzed cellular motility and invasion. Results: In HCC cell lines, Caveolin-1 expression is correlated to differentiation and basal motility status of these cells. The percentage of Caveolin-1 positivity was found extremely low in normal liver tissue (5%) while it was increased in cirrhosis (45%) and in HCC (66%) (p = 0.002 and p = 0.001 respectively). Cav-1 expression in poorly differentiated HCC samples has been found significantly higher than well differentiated ones (p = 0.001). The caveolin-1 expression was found significantly higher in tumor cells than its peritumoral cirrhotic tissues in HCC samples (p < 0.001). Additionally, the patients with positive staining for Caveolin-1 had significantly higher portal vein invasion than those with negative staining (p = 0.02). Caveolin-1 overexpression increased motility and invasion of HepG2 and Huh7 cells. And disruption of caveolae results in a dramatic decline in both motility and invasion abilities in SNU-449 and SNU-475 cells. Furthermore, caveolin-1 overexpression resulted in down-regulation of E-cadherin while up-regulation of Vimentin. Also, it increased secreted MMP-2 and expression levels of MMP-9 and MT1-MMP. There was no significant difference in colony formation in soft agar between stable clones and parental ones. Conclusion: In conclusion, stepwise increase in Cav-1 expression in neoplastic stage with respect to pre-neoplastic stage during hepatocellular carcinogenesis and its ability to stimulate HCC cell motility and invasiveness indicate that this protein plays a crucial role in tumor progression.

23 December 2022 in Nature Biomedical Engineering
Verified
Journal Article
Closed access
PDF file
KOKutsev Bengisu Ozyoruk
Kutsev Bengisu Ozyoruk
SCSermet Can
Sermet Can
BDBerkan Darbaz
Berkan Darbaz
KBKayhan Basak
Kayhan Basak
DDDerya Demir
Derya Demir
MTMehmet Turan
Mehmet Turan

1 January 2010 in European Journal of Gastroenterology & Hepatology
Verified
Journal Article
Closed access
ZOZiya Omer
Ziya Omer
SCSevki Cetinkalp
Sevki Cetinkalp
MAMurat Akyildiz
Murat Akyildiz
FYFunda Yılmaz
Funda Yılmaz
YBYucel Batur
Yucel Batur
UAUlus Akarca
Ulus Akarca
To investigate the efficacy of insulin-sensitizing agents in nonalcoholic fatty liver disease (NAFLD) patients. This is an open-label, randomized, a single-center study. Sixty-four patients, with impaired glucose metabolism and elevated alanine aminotransferase for at least 6 months before enrollment and NAFLD activity score at least 5 in liver biopsy, were randomized as group 1 and received metformin 1700 mg/day, group 2 received rosiglitazone 4 mg/day, and group 3 received a combination of metformin 1700 mg/day and rosiglitazone 4 mg/day for 12 months. Baseline demographic and laboratory findings were similar in all the three groups, except baseline insulin level that was significantly higher in group 1 and group 3 versus group 2 (P<0.05). Serum transaminase levels showed a significant decrease after treatment in both group 2 and group 3. Serum gamma-glutamyl transpeptidase levels decreased significantly only in the group 3. However, there was no significant change in liver tests of group 1. Postprandial glucose levels showed significant decrease in all of the three groups. Homeostasis model assessment-insulin resistance was reduced significantly in only group 2. NAFLD score was significantly decreased on follow-up biopsy of the patients in group 2 and group 3. Fibrosis did not change significantly after the treatment. Rosiglitazone therapy seems to be more effective in metabolic control and histological improvement in NAFLD patients with impaired glucose metabolism.