Katherine Dunn

Dr. Katherine Dunn

orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
19 August 2015 in Nature
Verified
Journal Article
Closed access
KDKatherine Dunn
Katherine Dunn
FDFrits Dannenberg
Frits Dannenberg
TOThomas E. Ouldridge
Thomas E. Ouldridge
MKMarta Kwiatkowska
Marta Kwiatkowska
ATAndrew J. Turberfield
Andrew J. Turberfield
JBJonathan Bath
Jonathan Bath

20 January 2021 in IEEE Open Journal of Engineering in Medicine and Biology
Verified
Journal Article
Open access
Ignaizo Maria ViolaIgnaizo Maria Viola
Ignaizo Maria Viola
BPBrian Peterson
Brian Peterson
GPGabriele Pisetta
Gabriele Pisetta
GPGeethanjali Pavar
Geethanjali Pavar
HAHibbah Akhtar
Hibbah Akhtar
FMFelicity V. Mehendale
Felicity V. Mehendale
The SARS-CoV-2 virus is primarily transmitted through virus-laden fluid particles ejected from the mouth of infected people. Face covers can mitigate the risk of virus transmission but their outward effectiveness is not fully ascertained. Objective: by using a background oriented schlieren technique, we aim to investigate the air flow ejected by a person while quietly and heavily breathing, while coughing, and with different face covers. Results: we found that all face covers without an outlet valve reduce the front flow through by at least 63% and perhaps as high as 86% if the unfiltered cough jet distance was resolved to the anticipated maximum distance of 2-3 m. However, surgical and handmade masks, and face shields, generate significant leakage jets that may present major hazards. Conclusions: the effectiveness of the masks should mostly be considered based on the generation of secondary jets rather than on the ability to mitigate the front throughflow.

14 September 2016 in Nature Communications
Verified
Journal Article
Open access
PDF file
JJJosé Juan-Colás
José Juan-Colás
APAlison Parkin
Alison Parkin
KDKatherine Dunn
Katherine Dunn
MSMark G. Scullion
Mark G. Scullion
TKThomas F. Krauss
Thomas F. Krauss
SJSteven Johnson
Steven Johnson
The emergence of personalized and stratified medicine requires label-free, low-cost diagnostic technology capable of monitoring multiple disease biomarkers in parallel. Silicon photonic biosensors combine high-sensitivity analysis with scalable, low-cost manufacturing, but they tend to measure only a single biomarker and provide no information about their (bio)chemical activity. Here we introduce an electrochemical silicon photonic sensor capable of highly sensitive and multiparameter profiling of biomarkers. Our electrophotonic technology consists of microring resonators optimally n-doped to support high Q resonances alongside electrochemical processes in situ. The inclusion of electrochemical control enables site-selective immobilization of different biomolecules on individual microrings within a sensor array. The combination of photonic and electrochemical characterization also provides additional quantitative information and unique insight into chemical reactivity that is unavailable with photonic detection alone. By exploiting both the photonic and the electrical properties of silicon, the sensor opens new modalities for sensing on the microscale.

29 May 2018 in ACS Nano
Verified
Journal Article
Closed access
MBMatthew A B Baker
Matthew A B Baker
ATAndrew J Tuckwell
Andrew J Tuckwell
JBJonathan F Berengut
Jonathan F Berengut
JBJonathan Bath
Jonathan Bath
FBFlorence Benn
Florence Benn
LLLawrence K Lee
Lawrence K Lee

28 October 2015 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
PDF file
FDFrits Dannenberg
Frits Dannenberg
KDKatherine Dunn
Katherine Dunn
JBJonathan Bath
Jonathan Bath
MKMarta Kwiatkowska
Marta Kwiatkowska
ATAndrew J. Turberfield
Andrew J. Turberfield
TOThomas E. Ouldridge
Thomas E. Ouldridge
We present a modelling framework, and basic model parameterization, for the study of DNA origami folding at the level of DNA domains. Our approach is explicitly kinetic and does not assume a specific folding pathway. The binding of each staple is associated with a free-energy change that depends on staple sequence, the possibility of coaxial stacking with neighbouring domains, and the entropic cost of constraining the scaffold by inserting staple crossovers. A rigorous thermodynamic model is difficult to implement as a result of the complex, multiply connected geometry of the scaffold: we present a solution to this problem for planar origami. Coaxial stacking of helices and entropic terms, particularly when loop closure exponents are taken to be larger than those for ideal chains, introduce interactions between staples. These cooperative interactions lead to the prediction of sharp assembly transitions with notable hysteresis that are consistent with experimental observations. We show that the model reproduces the experimentally observed consequences of reducing staple concentration, accelerated cooling, and absent staples. We also present a simpler methodology that gives consistent results and can be used to study a wider range of systems including non-planar origami.

20 April 2017 in ACS Nano
Verified
Journal Article
Open access
GMGabriella Marth
Gabriella Marth
AHAndrew M. Hartley
Andrew M. Hartley
SRSamuel C. Reddington
Samuel C. Reddington
LSLauren L. Sargisson
Lauren L. Sargisson
MPMarlène Parcollet
Marlène Parcollet
ESEugen Stulz
Eugen Stulz
We demonstrate an approach that allows attachment of single-stranded DNA (ssDNA) to a defined residue in a protein of interest (POI) so as to provide optimal and well-defined multicomponent assemblies. Using an expanded genetic code system, azido-phenylalanine (azF) was incorporated at defined residue positions in each POI; copper-free click chemistry was used to attach exactly one ssDNA at precisely defined residues. By choosing an appropriate residue, ssDNA conjugation had minimal impact on protein function, even when attached close to active sites. The protein-ssDNA conjugates were used to (i) assemble double-stranded DNA systems with optimal communication (energy transfer) between normally separate groups and (ii) generate multicomponent systems on DNA origami tiles, including those with enhanced enzyme activity when bound to the tile. Our approach allows any potential protein to be simply engineered to attach ssDNA or related biomolecules, creating conjugates for designed and highly precise multiprotein nanoscale assembly with tailored functionality.