Marek Sierka

Prof. Dr. Marek Sierka

Computational Materials Science, Otto-Schott-Institut für Materialforschung, Friedrich-Schiller-Universität Jena, Löbdergraben 32, D-07743 Jena, Germany
orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 May 2020 in The Journal of Chemical Physics
Verified
Journal Article
Open access
PDF file
SBSree Ganesh Balasubramani
Sree Ganesh Balasubramani
GCGuo P. Chen
Guo P. Chen
SCSonia Coriani
Sonia Coriani
MDMichael Diedenhofen
Michael Diedenhofen
MFMarius S. Frank
Marius S. Frank
JYJason M. Yu
Jason M. Yu
TURBOMOLE is a collaborative, multi-national software development project aiming to provide highly efficient and stable computational tools for quantum chemical simulations of molecules, clusters, periodic systems, and solutions. The TURBOMOLE software suite is optimized for widely available, inexpensive, and resource-efficient hardware such as multi-core workstations and small computer clusters. TURBOMOLE specializes in electronic structure methods with outstanding accuracy–cost ratio, such as density functional theory including local hybrids and the random phase approximation (RPA), GW-Bethe–Salpeter methods, second-order Møller–Plesset theory, and explicitly correlated coupled-cluster methods. TURBOMOLE is based on Gaussian basis sets and has been pivotal for the development of many fast and low-scaling algorithms in the past three decades, such as integral-direct methods, fast multipole methods, the resolution-of-the-identity approximation, imaginary frequency integration, Laplace transform, and pair natural orbital methods. This review focuses on recent additions to TURBOMOLE’s functionality, including excited-state methods, RPA and Green’s function methods, relativistic approaches, high-order molecular properties, solvation effects, and periodic systems. A variety of illustrative applications along with accuracy and timing data are discussed. Moreover, available interfaces to users as well as other software are summarized. TURBOMOLE’s current licensing, distribution, and support model are discussed, and an overview of TURBOMOLE’s development workflow is provided. Challenges such as communication and outreach, software infrastructure, and funding are highlighted.

29 June 2023 in Journal of Chemical Theory and Computation
Verified
Journal Article
Open access
YFYannick J. Franzke
Yannick J. Franzke
CHChristof Holzer
Christof Holzer
JAJosefine H. Andersen
Josefine H. Andersen
TBTomislav Begušić
Tomislav Begušić
FBFlorian Bruder
Florian Bruder
FWFlorian Weigend
Florian Weigend
TURBOMOLE is a highly optimized software suite for large-scale quantum-chemical and materials science simulations of molecules, clusters, extended systems, and periodic solids. TURBOMOLE uses Gaussian basis sets and has been designed with robust and fast quantum-chemical applications in mind, ranging from homogeneous and heterogeneous catalysis to inorganic and organic chemistry and various types of spectroscopy, light-matter interactions, and biochemistry. This Perspective briefly surveys TURBOMOLE's functionality and highlights recent developments that have taken place between 2020 and 2023, comprising new electronic structure methods for molecules and solids, previously unavailable molecular properties, embedding, and molecular dynamics approaches. Select features under development are reviewed to illustrate the continuous growth of the program suite, including nuclear electronic orbital methods, Hartree-Fock-based adiabatic connection models, simplified time-dependent density functional theory, relativistic effects and magnetic properties, and multiscale modeling of optical properties.

13 July 2018 in Chemistry – A European Journal
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Journal Article
Open access
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Alessandro GenoniAlessandro Genoni
Alessandro Genoni
LBLukas Bucinsky
Lukas Bucinsky
NCNicolas Claiser
Nicolas Claiser
JCJulia Contreras-Garcia
Julia Contreras-Garcia
BDBirger Dittrich
Birger Dittrich
SGSimon Grabowsky
Simon Grabowsky
Crystallography and quantum mechanics have always been tightly connected because reliable quantum mechanical models are needed to determine crystal structures. Due to this natural synergy, nowadays accurate distributions of electrons in space can be obtained from diffraction and scattering experiments. In the original definition of quantum crystallography (QCr) given by Massa, Karle and Huang, direct extraction of wavefunctions or density matrices from measured intensities of reflections or, conversely, ad hoc quantum mechanical calculations to enhance the accuracy of the crystallographic refinement are implicated. Nevertheless, many other active and emerging research areas involving quantum mechanics and scattering experiments are not covered by the original definition although they enable to observe and explain quantum phenomena as accurately and successfully as the original strategies. Therefore, we give an overview over current research that is related to a broader notion of QCr, and discuss options how QCr can evolve to become a complete and independent domain of natural sciences. The goal of this paper is to initiate discussions around QCr, but not to find a final definition of the field.

2 February 2012 in Physical Review B
Verified
Journal Article
Closed access
RWR. Włodarczyk
R. Włodarczyk
Marek SierkaMarek Sierka
Marek Sierka
JSJ. Sauer
J. Sauer
DLD. Löffler
D. Löffler
JUJ. J. Uhlrich
J. J. Uhlrich
HFH.-J. Freund
H.-J. Freund
A combination of density functional theory calculations and photoelectron spectroscopy provides new insights into the atomistic picture of ultrathin silica films grown on Ru(0001). The silica film features a double-layer silicate sheet formed by corner-sharing [SiO4] tetrahedra and is weakly bound to the Ru(0001) substrate. This allows oxygen atoms to reversibly adsorb directly on the metal surface underneath the silica film. We demonstrate that the amount of adsorbed oxygen can be reversibly varied by vacuum annealing and oxidation, which in turn result in gradual changes of the silica/Ru electronic states. This finding opens the possibility for tuning the electronic properties of oxide/metal systems without altering the thickness or the structure of an oxide overlayer.

11 June 2015 in Journal of Chemical Theory and Computation
Verified
Journal Article
Closed access
RŁRoman Łazarski
Roman Łazarski
ABAsbjörn M. Burow
Asbjörn M. Burow
Marek SierkaMarek Sierka
Marek Sierka

23 December 2014 in Nanoscale
Verified
Journal Article
Closed access
PDF file
AEAndreas Erlebach
Andreas Erlebach
HKHeinz-Dieter Kurland
Heinz-Dieter Kurland
JGJanet Grabow
Janet Grabow
FMFrank A. Müller
Frank A. Müller
Marek SierkaMarek Sierka
Marek Sierka
The atomic structure and properties of nanoparticulate Fe 2 O 3 are characterized starting from its smallest Fe 2 O 3 building unit through (Fe 2 O 3 ) n clusters to nanometer-sized Fe 2 O 3 particles.