Pavel Stoev

Prof. Pavel Stoev

orcid

Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 September 2014 in Biodiversity Data Journal
Verified
Journal Article
Open access
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YJYde de Jong
Yde de Jong
MVMelina Verbeek
Melina Verbeek
VMVerner Michelsen
Verner Michelsen
PBPer de Place Bjørn
Per de Place Bjørn
WLWouter Los
Wouter Los
LPLyubomir Penev
Lyubomir Penev
Fauna Europaea is Europe's main zoological taxonomic index, making the scientific names and distributions of all living, currently known, multicellular, European land and freshwater animals species integrally available in one authoritative database. Fauna Europaea covers about 260,000 taxon names, including 145,000 accepted (sub)species, assembled by a large network of (>400) leading specialists, using advanced electronic tools for data collations with data quality assured through sophisticated validation routines. Fauna Europaea started in 2000 as an EC funded FP5 project and provides a unique taxonomic reference for many user-groups such as scientists, governments, industries, nature conservation communities and educational programs. Fauna Europaea was formally accepted as an INSPIRE standard for Europe, as part of the European Taxonomic Backbone established in PESI. Fauna Europaea provides a public web portal at faunaeur.org with links to other key biodiversity services, is installed as a taxonomic backbone in wide range of biodiversity services and actively contributes to biodiversity informatics innovations in various initiatives and EC programs.

30 June 2010 in ZooKeys
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Journal Article
Open access
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LPLyubomir Penev
Lyubomir Penev
DADonat Agosti
Donat Agosti
TGTeodor Georgiev
Teodor Georgiev
TCTerry Catapano
Terry Catapano
JMJeremy Abraham Miller
Jeremy Abraham Miller
TETerry Erwin
Terry Erwin
The concept of semantic tagging and its potential for semantic enhancements to taxonomic papers is outlined and illustrated by four exemplar papers published in

1 January 2015
Verified
Book Chapter
Closed access
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HEHenrik Enghoff
Henrik Enghoff
SGSergei Golovatch
Sergei Golovatch
MSMegan Short
Megan Short
PSPavel Stoev
Pavel Stoev
TWThomas Wesener
Thomas Wesener
"Diplopoda — taxonomic overview" published on 01 Jan 2015 by Brill.

14 April 2011 in ZooKeys
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Journal Article
Open access
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PSPavel Stoev
Pavel Stoev
HEHenrik Enghoff
Henrik Enghoff
The millipede genus Sinocallipus is reviewed, with four new cave-dwelling species, Sinocallipus catba, Sinocallipus deharvengi, Sinocallipus jaegeri and Sin

28 October 2013 in Biodiversity Data Journal
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Journal Article
Open access
PDF file
PSPavel Stoev
Pavel Stoev
AKAna Komerički
Ana Komerički
NANesrine Akkari
Nesrine Akkari
SLShanlin Liu
Shanlin Liu
XZXin Zhou
Xin Zhou
LPLyubomir Penev
Lyubomir Penev
We demonstrate how a classical taxonomic description of a new species can be enhanced by applying new generation molecular methods, and novel computing and imaging technologies. A cave-dwelling centipede, Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae), found in a remote karst region in Knin, Croatia, is the first eukaryotic species for which, in addition to the traditional morphological description, we provide a fully sequenced transcriptome, a DNA barcode, detailed anatomical X-ray microtomography (micro-CT) scans, and a movie of the living specimen to document important traits of its ex-situ behaviour. By employing micro-CT scanning in a new species for the first time, we create a high-resolution morphological and anatomical dataset that allows virtual reconstructions of the specimen and subsequent interactive manipulation to test the recently introduced ‘cybertype’ notion. In addition, the transcriptome was recorded with a total of 67,785 scaffolds, having an average length of 812 bp and N50 of 1,448 bp (see GigaDB). Subsequent annotation of 22,866 scaffolds was conducted by tracing homologs against current available databases, including Nr, SwissProt and COG. This pilot project illustrates a workflow of producing, storing, publishing and disseminating large data sets associated with a description of a new taxon. All data have been deposited in publicly accessible repositories, such as GigaScience GigaDB, NCBI, BOLD, Morphbank and Morphosource, and the respective open licenses used ensure their accessibility and re-usability.

14 April 2011 in ZooKeys
Verified
Journal Article
Open access
PDF file
LPLyubomir Penev
Lyubomir Penev
GHGregor Hagedorn
Gregor Hagedorn
DMDaniel Mietchen
Daniel Mietchen
TGTeodor Georgiev
Teodor Georgiev
PSPavel Stoev
Pavel Stoev
TETerry Erwin
Terry Erwin
Scholarly publishing and citation practices have developed largely in the absence of versioned documents. The digital age requires new practices to combine the