Ota Samek

Dr. Ota Samek


Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2000 in Optical Engineering
Verified
Journal Article
Closed access
OSOta Samek
Ota Samek
DBDavid C. Beddows
David C. Beddows
Jozef KaiserJozef Kaiser
Jozef Kaiser
SKSergei V. Kukhlevsky
Sergei V. Kukhlevsky
MLMiroslav Liska
Miroslav Liska
AWAndrew J. Whitehouse
Andrew J. Whitehouse
A realization of laser-induced breakdown spectroscopy for real-time, in situ and remote analysis of trace amounts in liquid samples is described, which is potentially applicable to the analysis of pollutants in water in harsh or difficult-to-reach environments. Most of the measurements were conducted using a fiber assembly that is capable of both delivering the laser light and collecting the light emitted from the micro plasma, up to about 30 m from the target area. Alternatively, a telescopic arrangement for line-of-sight measurements was employed, with a range of 3 to 5 m. For internal standardization and the generation of concentration calibration curves, reference lines of selected elements were used. In the majority of cases calibration against the matrix element hydrogen was employed using the H?, H?, and H? lines, but also spiking with selected reference species was utilized. In order to provide high reliability and repeatability in the analyses, we also measured plasma parameters such as electron density, plasma temperature, and line- shape functions, and determined their influence on the measurement results. Numerous elements, including a range of toxic heavy metals, have been measured over a wide range of concentrations (Al, Cr, Cu, Pb, Tc, U, and others). Limits of detection usually were in the range of a few parts per million; for several elements even lower concentrations could be measured.

17 September 2010 in Sensors
Verified
Journal Article
Open access
PDF file
OSOta Samek
Ota Samek
AJAlexandr Jonáš
Alexandr Jonáš
ZPZdeněk Pilát
Zdeněk Pilát
PZPavel Zemánek
Pavel Zemánek
LNLadislav Nedbal
Ladislav Nedbal
MTMartin Trtílek
Martin Trtílek
Algae are becoming a strategic source of fuels, food, feedstocks, and biologically active compounds. This potential has stimulated the development of innovative analytical methods focused on these microorganisms. Algal lipids are among the most promising potential products for fuels as well as for nutrition. The crucial parameter characterizing the algal lipids is the degree of unsaturation of the constituent fatty acids quantified by the iodine value. Here we demonstrate the capacity of the spatially resolved Raman microspectroscopy to determine the effective iodine value in lipid storage bodies of individual living algal cells. The Raman spectra were collected from three selected algal species immobilized in an agarose gel. Prior to immobilization, the algae were cultivated in the stationary phase inducing an overproduction of lipids. We employed the characteristic peaks in the Raman scattering spectra at 1,656 cm−1 (cis C=C stretching mode) and 1,445 cm−1 (CH2 scissoring mode) as the markers defining the ratio of unsaturated-to-saturated carbon-carbon bonds of the fatty acids in the algal lipids. These spectral features were first quantified for pure fatty acids of known iodine value. The resultant calibration curve was then used to calculate the effective iodine value of storage lipids in the living algal cells from their Raman spectra. We demonstrated that the iodine value differs significantly for the three studied algal species. Our spectroscopic estimations of the iodine value were validated using GC-MS measurements and an excellent agreement was found for the Trachydiscus minutus species. A good agreement was also found with the earlier published data on Botryococcus braunii. Thus, we propose that Raman microspectroscopy can become technique of choice in the rapidly expanding field of algal biotechnology.

1 January 2009 in Spectrochimica Acta Part B: Atomic Spectroscopy
Verified
Journal Article
Closed access
Jozef KaiserJozef Kaiser
Jozef Kaiser
MGM. Galiová
M. Galiová
KNK. Novotný
K. Novotný
RČR. Červenka
R. Červenka
LRL. Reale
L. Reale
Rene KizekRene Kizek
Rene Kizek

28 April 2006 in Mass Spectrometry Reviews
Verified
Journal Article
Closed access
PDF file
RHRoland Hergenröder
Roland Hergenröder
OSOta Samek
Ota Samek
VHVanja Hommes
Vanja Hommes

24 October 2013 in Molecules
Verified
Journal Article
Open access
PDF file
SBSilvie Bernatova
Silvie Bernatova
OSOta Samek
Ota Samek
ZPZdeněk Pilát
Zdeněk Pilát
MŠMojmír Šerý
Mojmír Šerý
JJJan Jezek
Jan Jezek
FRFilip Růžička
Filip Růžička
Antibiotics cure infections by influencing bacterial growth or viability. Antibiotics can be divided to two groups on the basis of their effect on microbial cells through two main mechanisms, which are either bactericidal or bacteriostatic. Bactericidal antibiotics kill the bacteria and bacteriostatic antibiotics suppress the growth of bacteria (keep them in the stationary phase of growth). One of many factors to predict a favorable clinical outcome of the potential action of antimicrobial chemicals may be provided using in vitro bactericidal/bacteriostatic data (e.g., minimum inhibitory concentrations—MICs). Consequently, MICs are used in clinical situations mainly to confirm resistance, and to determine the in vitro activities of new antimicrobials. We report on the combination of data obtained from MICs with information on microorganisms’ “fingerprint” (e.g., DNA/RNA, and proteins) provided by Raman spectroscopy. Thus, we could follow mechanisms of the bacteriostatic versus bactericidal action simply by detecting the Raman bands corresponding to DNA. The Raman spectra of Staphylococcus epidermidis treated with clindamycin (a bacteriostatic agent) indeed show little effect on DNA which is in contrast with the action of ciprofloxacin (a bactericidal agent), where the Raman spectra show a decrease in strength of the signal assigned to DNA, suggesting DNA fragmentation.

1 June 2001 in Spectrochimica Acta Part B: Atomic Spectroscopy
Verified
Journal Article
Closed access
OSOta Samek
Ota Samek
DBD.C.S Beddows
D.C.S Beddows
HTH.H Telle
H.H Telle
Jozef KaiserJozef Kaiser
Jozef Kaiser
MLM Liška
M Liška
AUA Gonzáles Ureña
A Gonzáles Ureña