Shih-Yao Lin

Dr. Shih-Yao Lin

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2014 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
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AHAsif Hameed
Asif Hameed
MSMariyam Shahina
Mariyam Shahina
SLShih-Yao Lin
Shih-Yao Lin
WLWei-An Lai
Wei-An Lai
YHYi-Han Hsu
Yi-Han Hsu
CYChiu-Chung Young
Chiu-Chung Young
A Gram-stain-negative, strictly aerobic, rod-shaped, non-flagellated, non-spore-forming and gliding marine bacterium, designated strain CC-AMZ-304T, was isolated from coastal surface seawater near Taichung harbour, Taiwan. Strain CC-AMZ-304T predominantly synthesized zeaxanthin and thus formed yellow colonies on marine agar. The novel strain showed an unstable phylogenetic position, although sharing high pairwise 16S rRNA gene sequence similarities of 95.9–94.9, 95.7 and 95.1–93.9 % with Gaetbulibacter species (n = 4), Aestuariibaculum suncheonense SC17T and Bizionia species (n = 7), respectively. The polar lipid profile of strain CC-AMZ-304T consisted of phosphatidylethanolamine, five unidentified lipids, one unidentified phospholipid, two unidentified aminolipids and one unidentified glycolipid. The major (>5 % of the total) fatty acids were iso-C15 : 0, iso-C15 : 1 G, iso-C17 : 0 3-OH, iso-C15 : 0 3-OH and C15 : 1ω5c. The DNA G+C content was 36.0 mol%. Menaquinone-6 (MK-6) was the sole respiratory quinone and the major polyamine was triamine sym-homospermidine. Phylogenetic distinctiveness, unique polar lipid composition, presence of significant amounts of branched hydroxyl fatty acids (iso-C17 : 0 3-OH and iso-C15 : 0 3-OH) and a low amount of anteiso-C15 : 0, and several additional distinguishing biochemical features clearly discriminated strain CC-AMZ-304T from the type species of the genera Aestuariibaculum and Gaetbulibacter . Thus, based on data from the present polyphasic study, strain CC-AMZ-304T is considered to represent a novel species of a new genus within the family Flavobacteriaceae , for which the name Aquibacter zeaxanthinifaciens gen. nov., sp. nov. is proposed; the type strain of Aquibacter zeaxanthinifaciens is CC-AMZ-304T ( = JCM 18557T = BCRC 80463T). Emended descriptions of the genera Aestuariibaculum and Gaetbulibacter are also proposed.

1 October 2013 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
Open access
SLShih-Yao Lin
Shih-Yao Lin
YLYou-Cheng Liu
You-Cheng Liu
AHAsif Hameed
Asif Hameed
YHYi-Han Hsu
Yi-Han Hsu
WLWei-An Lai
Wei-An Lai
CYChiu-Chung Young
Chiu-Chung Young
An aerobic, Gram-stain-negative, spiral or rod-shaped, non-spore-forming, diazotrophic bacterium (strain CC-LY743T) was isolated from a fermentative tank in Taiwan. Strain CC-LY743T was able to grow at 20–37 °C and pH 6.0–8.0 and tolerated up to 3.0 % (w/v) NaCl. It was positive for nitrogen fixation, with activity of 10.6 nmol ethylene h−1. 16S rRNA gene sequence analysis of strain CC-LY743T showed highest similarity to Azospirillum picis DSM 19922T (96.1 %), Azospirillum oryzae JCM 21588T (96.0 %) and Azospirillum rugosum DSM 19657T (96.0 %) and lower similarity (<96.0 %) to all other Azospirillum species. Highest nifH gene sequence similarities were obtained with Azospirillum brasilense BCRC 12270T (92.0 %), Azospirillum formosense BCRC 80273T (92.3 %) and A. rugosum DSM 19657T (91.8 %). It was positive in the rapid identification by a genus-specific primer set. The predominant quinone system was ubiquinone 10 (Q-10) and the DNA G+C content was 69.6±0.1 mol%. The major fatty acids found in strain CC-LY743T were n-C16 : 0, C19 : 0 cyclo ω8c, C14 : 0 3-OH/C16 : 1 iso I, C16 : 1ω7c/C16 : 1ω6c and C18 : 1ω7c/C18 : 1ω6c. Based on its phylogenetic, phenotypic and chemotaxonomic features, strain CC-LY743T is considered to represent a novel species within the genus Azospirillum for which the name Azospirillum fermentarium sp. nov. is proposed. The type strain is CC-LY743T ( = BCRC 80505T = JCM 18688T = LMG 27264T).

1 February 2014 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
Open access
SLShih-Yao Lin
Shih-Yao Lin
AHAsif Hameed
Asif Hameed
YLYou-Cheng Liu
You-Cheng Liu
YHYi-Han Hsu
Yi-Han Hsu
WLWei-An Lai
Wei-An Lai
CYChiu-Chung Young
Chiu-Chung Young
An aerobic, Gram-stain-negative, rod-shaped, DDT-resistant bacterium, designated strain CC-ALB-2T, was isolated from the Arabidopsis thaliana rhizosphere. Strain CC-ALB-2T was able to grow at 25–37 °C, at pH 5.0–8.0, with 1.0 % (w/v) NaCl and tolerate up to 200 mg l−1 DDT. 16S rRNA gene sequence analysis of strain CC-ALB-2T showed highest sequence similarity to Novosphingobium stygium KCTC 2891T (97.1 %) and Novosphingobium soli DSM 22821T (96.8 %), and lower levels of similarity (<97.0 %) to other species of the genus Novosphingobium . The major fatty acid profile consisted of C14 : 0 2-OH (13.1 %), C16 : 0 (10.0 %), C15 : 0 iso 3-OH (5.8 %), C16 : 1ω7c/C16 : 1ω6c (summed feature 3, 24.7 %) and C18 : 1ω7c/C18 : 1ω6c (summed feature 8, 42.4 %). The polar lipid profile constitutes sphingoglycolipid, glycolipid, diphosphatidylglycerol, phosphatidylethanolamine, phosphatidyldimethylethanolamine, phosphatidylglycerol and phosphatidylcholine. The polyamine pattern showed a predominance of spermidine as the major polyamine. The predominant quinone system was ubiquinone (Q-10). The DNA G+C content was 68.9±0.1 mol%. Based on the phylogenetic, phenotypic and chemotaxonomic features, strain CC-ALB-2T is proposed to represent a novel species of the genus Novosphingobium for which the name Novosphingobium arabidopsis sp. nov. is proposed. The type strain is CC-ALB-2T ( = BCRC 80571T = JCM 18896T).

31 July 2013 in Applied Biochemistry and Biotechnology
Verified
Journal Article
Closed access
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SPSudharshan Prabhu
Sudharshan Prabhu
RPRekha Pd
Rekha Pd
CYChiu-Chung Young
Chiu-Chung Young
AHAsif Hameed
Asif Hameed
SLShih-Yao Lin
Shih-Yao Lin
AAArun AB
Arun AB

1 May 2012 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
Open access
SLShih-Yao Lin
Shih-Yao Lin
FSFo-Ting Shen
Fo-Ting Shen
LYLi-Sen Young
Li-Sen Young
ZZZhi-Long Zhu
Zhi-Long Zhu
WCWen-Ming Chen
Wen-Ming Chen
CYChiu-Chung Young
Chiu-Chung Young
A Gram-negative, spiral or rod-shaped, non-spore-forming diazotrophic bacterium, designated CC-Nfb-7T, was isolated from agricultural soil in Yunlin County, Taiwan. 16S rRNA gene sequence analysis showed that strain CC-Nfb-7T was most closely related to Azospirillum brasilense DSM 1690T (97.4 % 16S rRNA gene sequence similarity), Azospirillum rugosum IMMIB AFH-6T (96.8 %) and Azospirillum oryzae JCM 21588T (96.6 %); <96.5 % 16S rRNA gene sequence similarity was found with all other members of the genus Azospirillum . DNA–DNA relatedness between strain CC-Nfb-7T and A. brasilense DSM 1690T, A. rugosum DSM 19657T and A. oryzae JCM 21588T was 38.9, 30.1 and 31.8 %, respectively. The respiratory quinone was ubiquinone Q-10. The major fatty acids were summed feature 8 (consisting of C18 : 1ω7c and/or C18 : 1ω6c), summed feature 3 (consisting of C16 : 1ω7c and/or C16 : 1ω6c), summed feature 2 (consisting of C14 : 0 3-OH and/or iso-C16 : 1 I), C16 : 0, C18 : 0 2-OH and C16 : 0 3-OH. The polar lipids consisted mainly of phosphatidylglycerol, phosphatidylcholine and one unidentified phospholipid. Furthermore, moderate amounts of phosphatidylethanolamine, phosphatidyldimethylethanolamine and one unidentified aminophospholipid were also detected. Strain CC-Nfb-7T could be distinguished from members of phylogenetically related species by differences in phenotypic properties. On the basis of morphological, chemotaxonomic and phylogenetic data, strain CC-Nfb-7T represents a novel species within the genus Azospirillum , for which we propose the name Azospirillum formosense sp. nov. The type strain is CC-Nfb-7T ( = BCRC 80273T = JCM 17639T = DSM 24137T).