Reliable estimation of the peak shear strength of squat reinforced concrete (RC) walls remains challenging because their resistance is governed by interacting concrete and reinforcement mechanisms. Conventional strut-and-tie models (STMs) employ fixed coefficients, whereas purely data-driven machine learning (ML) models do not explicitly represent the underlying force-transfer mechanisms. To address these limitations, this study develops a mechanics-informed graph neural network-guided strut-and-tie model (STM-GNN). The framework embeds the STM force-transfer topology within a five-node graph representing the wall panel, diagonal concrete strut, boundary element, horizontal truss, and vertical truss. The GNN learns specimen-specific correction factors for the concrete strut-tie, horizontal-truss, and vertical-truss contributions rather than applying a single correction to the total shear strength. Physics-based constraints enforce non-negative resistance components, bounded correction factors, and compliance with the theoretical concrete-strut capacity. An ensemble of STM-GNN models estimates specimen-level uncertainty, while SHAP analysis provides feature-level interpretation. The framework was developed and evaluated using 614 RC squat-wall specimens compiled from experimental studies. On the held-out test set, the ensemble STM-GNN achieved an (R2) of 0.978, an MAE of 58.74 kN, and an RMSE of 88.80 kN. The mean ratio was 0.974, with a coefficient of variation of 11.57%; 79.12% and 95.60% of the predictions were within ±15% and ±30% of the experimental strengths, respectively. Compared with the calibrated classical STM, the proposed model reduced the MAE and RMSE by 35.5% and 39.1%, respectively, and outperformed eight benchmark analytical models. SHAP analysis identified wall length, wall height, wall thickness, and boundary-element width as the dominant variables, with effects consistent with established shear-transfer behavior. The proposed STM-GNN therefore improves predictive accuracy while preserving mechanism-level interpretability and providing uncertainty-informed shear-strength estimates.