The objective of this research was to optimize a technological package for the biosorption of heavy metals in water, using agricultural waste activated with lemon juice, as a sustainable development alternative. Heavy metals such as lead, cadmium, copper, and chromium were characterized in two stages (field and laboratory conditions) using the American Public Health Association (APHA) method, and morphological characterization was performed using electron scanning techniques. Cocoa pod husk (CPH) and banana stem (BS) waste was collected with the informed consent of the native communities to obtain charcoal activated with lemon juice (LJ). In addition, a portable filter was designed that could be adapted to the native communities. The efficiency and validation of the filter were also calculated in the field. Statistical analysis was performed using Student’s t-test and Pearson’s correlation. The results show a significant reduction in lead from 0.209 mg/L to 0.02 mg/L. With regard to morphological characterization, more compact structures were observed after activation with BS, favoring the absorption of heavy metals. The correlations were positive for copper and lead (1.000), evidently due to the alteration of anthropic factors. The efficiency of the cocoa filter reached 87.48% and that of the banana stem reached 88.77%. For the cadmium, copper, and chromium parameters, the values obtained were within the maximum permissible limit (LMP). The validation of the filters showed that 80% of the population agrees with using the filters and hopes for their large-scale implementation. These findings represent a new alternative for native communities and a solution to the problem of heavy metals in drinking water.