Mustafa Ege Seker

Dr. Mustafa Ege Seker

Radiology, University of Wisconsin–Madison, Madison, Alabama, USA
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 February 2024 in European Journal of Radiology
Verified
Journal Article
Closed access
ECEsma Cerekci
Esma Cerekci
DADeniz Can Aliş
Deniz Can Aliş
NDNurper Denizoğlu
Nurper Denizoğlu
OCOzden Camurdan
Ozden Camurdan
Mustafa Ege SekerMustafa Ege Seker
Mustafa Ege Seker
EKErcan Karaarslan
Ercan Karaarslan

21 January 2022 in Technology in Cancer Research & Treatment
Verified
Journal Article
Open access
IYInci Kizildag Yirgin
Inci Kizildag Yirgin
YKYilmaz Onat Koyluoglu
Yilmaz Onat Koyluoglu
Mustafa Ege SekerMustafa Ege Seker
Mustafa Ege Seker
SGSibel Ozkan Gurdal
Sibel Ozkan Gurdal
AOAyse Nilufer Ozaydin
Ayse Nilufer Ozaydin
EAErkin Aribal
Erkin Aribal
Purpose: To evaluate the performance of an artificial intelligence (AI) algorithm in a simulated screening setting and its effectiveness in detecting missed and interval cancers. Methods: Digital mammograms were collected from Bahcesehir Mammographic Screening Program which is the first organized, population-based, 10-year (2009-2019) screening program in Turkey. In total, 211 mammograms were extracted from the archive of the screening program in this retrospective study. One hundred ten of them were diagnosed as breast cancer (74 screen-detected, 27 interval, 9 missed), 101 of them were negative mammograms with a follow-up for at least 24 months. Cancer detection rates of radiologists in the screening program were compared with an AI system. Three different mammography assessment methods were used: (1) 2 radiologists’ assessment at screening center, (2) AI assessment based on the established risk score threshold, (3) a hypothetical radiologist and AI team-up in which AI was considered to be the third reader. Results: Area under curve was 0.853 (95% CI = 0.801-0.905) and the cut-off value for risk score was 34.5% with a sensitivity of 72.8% and a specificity of 88.3% for AI cancer detection in ROC analysis. Cancer detection rates were 67.3% for radiologists, 72.7% for AI, and 83.6% for radiologist and AI team-up. AI detected 72.7% of all cancers on its own, of which 77.5% were screen-detected, 15% were interval cancers, and 7.5% were missed cancers. Conclusion: AI may potentially enhance the capacity of breast cancer screening programs by increasing cancer detection rates and decreasing false-negative evaluations.

19 June 2023 in Insights into Imaging
Verified
Journal Article
Open access
PDF file
AKAhmet Karagoz
Ahmet Karagoz
DADeniz Can Aliş
Deniz Can Aliş
Mustafa Ege SekerMustafa Ege Seker
Mustafa Ege Seker
GZGokberk Zeybel
Gokberk Zeybel
MYMert Yergin
Mert Yergin
EKErcan Karaarslan
Ercan Karaarslan
Objective: To evaluate the effectiveness of a self-adapting deep network, trained on large-scale bi-parametric MRI data, in detecting clinically significant prostate cancer (csPCa) in external multi-center data from men of diverse demographics; to investigate the advantages of transfer learning. Methods: We used two samples: (i) Publicly available multi-center and multi-vendor Prostate Imaging: Cancer AI (PI-CAI) training data, consisting of 1500 bi-parametric MRI scans, along with its unseen validation and testing samples; (ii) In-house multi-center testing and transfer learning data, comprising 1036 and 200 bi-parametric MRI scans. We trained a self-adapting 3D nnU-Net model using probabilistic prostate masks on the PI-CAI data and evaluated its performance on the hidden validation and testing samples and the in-house data with and without transfer learning. We used the area under the receiver operating characteristic (AUROC) curve to evaluate patient-level performance in detecting csPCa. Results: The PI-CAI training data had 425 scans with csPCa, while the in-house testing and fine-tuning data had 288 and 50 scans with csPCa, respectively. The nnU-Net model achieved an AUROC of 0.888 and 0.889 on the hidden validation and testing data. The model performed with an AUROC of 0.886 on the in-house testing data, with a slight decrease in performance to 0.870 using transfer learning. Conclusions: The state-of-the-art deep learning method using prostate masks trained on large-scale bi-parametric MRI data provides high performance in detecting csPCa in internal and external testing data with different characteristics, demonstrating the robustness and generalizability of deep learning within and across datasets. Clinical relevance statement: A self-adapting deep network, utilizing prostate masks and trained on large-scale bi-parametric MRI data, is effective in accurately detecting clinically significant prostate cancer across diverse datasets, highlighting the potential of deep learning methods for improving prostate cancer detection in clinical practice. Graphical

15 February 2024 in European Journal of Radiology
Verified
Journal Article
Closed access
EAErkin Aribal
Erkin Aribal
NGNilgun Guldogan
Nilgun Guldogan
Mustafa Ege SekerMustafa Ege Seker
Mustafa Ege Seker
EYEbru Yilmaz
Ebru Yilmaz
ETEbru Banu Turk
Ebru Banu Turk

29 April 2024 in Diagnostic and Interventional Radiology
Verified
Journal Article
Open access
DADeniz Can Aliş
Deniz Can Aliş
TTToygar Tanyel
Toygar Tanyel
EMEmine Meltem
Emine Meltem
Mustafa Ege SekerMustafa Ege Seker
Mustafa Ege Seker
DSDelal Seker
Delal Seker
IÖİlKay Öksüz
İlKay Öksüz
The rapid evolution of artificial intelligence (AI), particularly in deep learning, has significantly impacted radiology, introducing an array of AI solutions for interpretative tasks. This paper provides radiology departments with a practical guide for selecting and integrating AI solutions, focusing on interpretative tasks that require the active involvement of radiologists. Our approach is not to list available applications or review scientific evidence, as this information is readily available in previous studies; instead, we concentrate on the essential factors radiology departments must consider when choosing AI solutions. These factors include clinical relevance, performance and validation, implementation and integration, clinical usability, costs and return on investment, and regulations, security, and privacy. We illustrate each factor with hypothetical scenarios to provide a clearer understanding and practical relevance. Through our experience and literature review, we provide insights and a practical roadmap for radiologists to navigate the complex landscape of AI in radiology. We aim to assist in making informed decisions that enhance diagnostic precision, improve patient outcomes, and streamline workflows, thus contributing to the advancement of radiological practices and patient care.

4 November 2023 in BMC Women's Health
Verified
Journal Article
Open access
PDF file
MHMuge Halici
Muge Halici
Mustafa Ege SekerMustafa Ege Seker
Mustafa Ege Seker
IGIrem Yagmur Gebedek
Irem Yagmur Gebedek
MGMerve Nida Gokbak
Merve Nida Gokbak
ACAbdurrahman Furkan Cetişli
Abdurrahman Furkan Cetişli
YCYigit Cakiroglu
Yigit Cakiroglu
Background: Ovarian reserve is the number of oocytes remaining in the ovary and is one of the most important aspects of a woman’s reproductive potential. Research on the association between thyroid dysfunction and ovarian reserve has yielded controversial results. In our study, we aimed to investigate the relationship between thyroid-stimulating hormone (TSH) levels and ovarian reserve markers. Methods: From 1443 women seeking infertility care, the data of 1396 women aged between 20–45 years old who had a body mass index between 18–30 kg/m2 were recruited for this retrospective study. The anti-Müllerian hormone (AMH) and TSH relationship was analyzed with generalized linear and polynomial regression. Results: Median age, follicle-stimulating hormone (FSH), AMH, and TSH levels were 36.79 years, 9.55 IU/L, 3.57 pmol/L, and 1.80 mIU/L, respectively. Differences between TSH groups were statistically significant in terms of AMH level, antral follicle count (AFC), and age (p = 0.007 and p = 0.038, respectively). A generalized linear regression model could not explain age-matched TSH levels concerning AMH levels (p > 0.05). TSH levels were utilized in polynomial regression models of AMH, and the 2nd degree was found to have the best fit. The inflection point of the model was 2.88 mIU/L. Conclusions: Our study shows a correlation between TSH and AMH values in a population of infertile women. Our results are as follows: a TSH value of 2.88 mIU/L yields the highest AMH result. It was also found that AMH and AFC were positively correlated, while AMH and FSH were negatively correlated.