The application of a machine learning (ML) model to bio-electrochemical anaerobic digestion (BEAD) is a future-oriented approach for improving process stability by predicting performances that have nonlinear relationships with various operational parameters. Five ML models, which included tree-, regression-, and neural network-based algorithms, were applied to predict the methane yield in BEAD reactor. The results showed that various 1-step ahead ML models, which utilized prior data of BEAD performances, could enhance prediction accuracy. In addition, 1-step ahead with retraining algorithm could improve prediction accuracy by 37.3% compared with the conventional multi-step ahead algorithm. The improvement was particularly noteworthy in tree- and regression-based ML models. Moreover, 1-step ahead with retraining algorithm showed high potential of achieving efficient prediction using pH as a single input data, which is plausibly an easier monitoring parameter compared with the other parameters required in bioprocess models.