Sakae Tsuda

Prof. Sakae Tsuda

Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST)2-17-2-1 Tsukisamu-Higashi, Toyohira, Sapporo 062-8517, Japan

Research Focus & Metrics

Academic Career Length

39Years (1988-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 February 2004 in Angewandte Chemie International Edition
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YTYuki Tachibana
Yuki Tachibana
GFGarth L. Fletcher
Garth L. Fletcher
NFNaoki Fujitani
Naoki Fujitani
STSakae Tsuda
Sakae Tsuda
KMKenji Monde
Kenji Monde
SNShin‐Ichiro Nishimura
Shin‐Ichiro Nishimura

1 September 1995 in Nature Structural & Molecular Biology
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SGStéphane M. Gagné
Stéphane M. Gagné
STSakae Tsuda
Sakae Tsuda
MLMonica X. Li
Monica X. Li
LSLawrence B. Smillie
Lawrence B. Smillie
BSBrian D. Sykes
Brian D. Sykes

1 June 2000 in Journal of Biological Chemistry
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Journal Article
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TSTetsuya Suetake
Tetsuya Suetake
STSakae Tsuda
Sakae Tsuda
SKShun-Ichiro Kawabata
Shun-Ichiro Kawabata
KMKazunori Miura
Kazunori Miura
SISadaaki Iwanaga
Sadaaki Iwanaga
KKKeiichi Kawano
Keiichi Kawano
Tachycitin, a 73-residue polypeptide having antimicrobial activity is present in the hemocyte of horseshoe crab (Tachypleus tridentatus). The first three-dimensional structure of invertebrate chitin-binding protein was determined for tachycitin using two-dimensional nuclear magnetic resonance spectroscopy. The measurements indicate that the structure of tachycitin is largely divided into N- and C-terminal domains; the former comprises a three-stranded beta-sheet and the latter a two-stranded beta-sheet following a short helical turn. The latter structural motif shares a significant tertiary structural similarity with the chitin-binding domain of plant chitin-binding protein. This result is thought to provide faithful experimental evidence to the recent hypothesis that chitin-binding proteins of invertebrates and plants are correlated by a convergent evolution process.

1 November 1994 in Protein Science
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SGStéphane M. Gagné
Stéphane M. Gagné
STSakae Tsuda
Sakae Tsuda
MLMonica X. Li
Monica X. Li
MCMurali Chandra
Murali Chandra
LSLawrence B. Smillie
Lawrence B. Smillie
BSBrian D. Sykes
Brian D. Sykes
The backbone resonance assignments have been completed for the apo (1H and 15N) and calcium‐loaded (1H, 15N, and 13C) regulatory N‐domain of chicken skeletal troponin‐C (1–90), using multidimensional homonuclear and heteronuclear NMR spectroscopy. The chemical‐shift information, along with detailed NOE analysis and 3JHNHα coupling constants, permitted the determination and quantification of the Ca2+‐induced secondary structural change in the N‐domain of TnC. For both structures, 5 helices and 2 short β‐strands were found, as was observed in the apo N‐domain of the crystal structure of whole TnC (Herzberg O, James MNG, 1988, J Mol Biol 203:761–779). The NMR solution structure of the apo form is indistinguishable from the crystal structure, whereas some structural differences are evident when comparing the 2Ca2+ state solution structure with the apo one. The major conformational change observed is the straightening of helix‐B upon Ca2+ binding. The possible importance and role of this conformational change is explored. Previous CD studies on the regulatory domain of TnC showed a significant Ca2+‐induced increase in negative ellipticity, suggesting a significant increase in helical content upon Ca2+ binding. The present study shows that there is virtually no change in α‐helical content associated with the transition from apo to the 2Ca2+ state of the N‐domain of TnC. Therefore, the Ca2+‐induced increase in ellipticity observed by CD does not relate to a change in helical content, but more likely to changes in spatial orientation of helices.

1 October 2002 in Biochemical and Biophysical Research Communications
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MKMichiya Koike
Michiya Koike
TOTakashi Okamoto
Takashi Okamoto
STSakae Tsuda
Sakae Tsuda
RIRyozo Imai
Ryozo Imai

29 May 2012 in Proceedings of the National Academy of Sciences
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HKHidemasa Kondo
Hidemasa Kondo
YHYuichi Hanada
Yuichi Hanada
HSHiroshi Sugimoto
Hiroshi Sugimoto
THTamotsu Hoshino
Tamotsu Hoshino
CGChristopher P. Garnham
Christopher P. Garnham
STSakae Tsuda
Sakae Tsuda
Antifreeze proteins (AFPs) are found in organisms ranging from fish to bacteria, where they serve different functions to facilitate survival of their host. AFPs that protect freeze-intolerant fish and insects from internal ice growth bind to ice using a regular array of well-conserved residues/motifs. Less is known about the role of AFPs in freeze-tolerant species, which might be to beneficially alter the structure of ice in or around the host. Here we report the 0.95-Å high-resolution crystal structure of a 223-residue secreted AFP from the snow mold fungus Typhula ishikariensis . Its main structural element is an irregular β-helix with six loops of 18 or more residues that lies alongside an α-helix. β-Helices have independently evolved as AFPs on several occasions and seem ideally structured to bind to several planes of ice, including the basal plane. A novelty of the β-helical fold is the nonsequential arrangement of loops that places the N- and C termini inside the solenoid of β-helical coils. The ice-binding site (IBS), which could not be predicted from sequence or structure, was located by site-directed mutagenesis to the flattest surface of the protein. It is remarkable for its lack of regularity and its poor conservation in homologs from psychrophilic diatoms and bacteria and other fungi.