Sucharit Neogi

Dr. Sucharit Neogi

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 January 2017 in Asian Journal of Medical and Biological Research
Verified
Journal Article
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SNSucharit Neogi
Sucharit Neogi
MDMouri Dey
Mouri Dey
SKS M Lutful Kabir
S M Lutful Kabir
SMSyed Jahangir H Masum
Syed Jahangir H Masum
GKGerman Kopprio
German Kopprio
RLRubén Lara
Rubén Lara
The Bengal delta coast harboring the famous Sundarban mangroves is extremely vulnerable to climate change. Already, salinity intrusion, increasing cyclones and anomalies in rainfall, and temperature, are causing many social and livelihood problems. However, our knowledge on the diversified climate change impacts on Sundarban ecosystems services, providing immense benefits, including foods, shelters, livelihood, and health amenities, is very limited. Therefore, this article has systematically reviewed the major functional aspects, and highlights on biodiversity, ecosystem dynamics, and services of the Sunderban mangroves, with respect to variations in climatic factors. The mangrove ecosystems are highly productive in terms of forest biomass, and nutrient contribution, especially through detritus-based food webs, to support rich biodiversity in the wetlands and adjacent estuaries. Sundarban mangroves also play vital role in atmospheric CO2 sequestration, sediment trapping and nutrient recycling. Sea level rise will engulf a huge portion of the mangroves, while the associated salinity increase is posing immense threats to biodiversity and economic losses. Climate-mediated changes in riverine discharge, tides, temperature, rainfall and evaporation will determine the wetland nutrient variations, influencing the physiological and ecological processes, thus biodiversity and productivity of Sundarban mangroves. Hydrological changes in wetland ecosystems through increased salinity and cyclones will lower the food security, and also induce human vulnerabilities to waterborne diseases. Scientific investigations producing high resolution data to identify Sundarban?s multidimensional vulnerabilities to various climatic regimes are essential. Sustainable plans and actions are required integrating conservation and climate change adaptation strategies, including promotion of alternative livelihoods. Thus, interdisciplinary approaches are required to address the future climatic disasters, and better protection of invaluable ecosystem services of the Sunderban mangroves.Asian J. Med. Biol. Res. December 2016, 2(4): 488-507

7 March 2021 in Pathogens
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Journal Article
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NHNazmul Hoque
Nazmul Hoque
SK SHAHEENUR ISLAMSK SHAHEENUR ISLAM
SK SHAHEENUR ISLAM
Md. Nasir UddinMd. Nasir Uddin
Md. Nasir Uddin
Mohammad ArifMohammad Arif
Mohammad Arif
AHAKM Haque
AKM Haque
SKS. M. Lutful Kabir
S. M. Lutful Kabir
A cross-sectional survey was conducted in selected districts of Bangladesh to estimate prevalence, risk factors, and molecular detection of Campylobacter isolates from 540 farmed cattle of 90 herds. As an individual sample, 540 feces, and as a pooled sample, 180 milk samples, 90 feed samples, 90 water samples, 90 manure samples, and 90 animal attendants’ hand-rinse water were collected and tested via culture, biochemical, and molecular assays. A pretested semi-structured questionnaire was used to collect herd-level data on risk factors with the herd owners. The herd-level data on risk factors were analyzed through univariate and multivariate analyses, and a p-value 5 years of age), no/minimum cleaning and disinfection practices, along with animal roaming outside of the farm, were documented as significant risk factors for farm-level Campylobacter occurrence. Evidence-based control measures need to be taken through stringent biosecurity and hygienic measurement to lessen the load of the Campylobacter pathogen in the farm environment and prevent further transmission to animals and humans.

23 April 2021 in Veterinary Sciences
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AHAKM Haque
AKM Haque
MAMir Rowshan Akter
Mir Rowshan Akter
SK SHAHEENUR ISLAMSK SHAHEENUR ISLAM
SK SHAHEENUR ISLAM
JAJahangir Alam
Jahangir Alam
SNSucharit Neogi
Sucharit Neogi
SKS. M. Lutful Kabir
S. M. Lutful Kabir
Salmonella Gallinarum is one of the most important bacterial pathogens associated with diminished egg production in poultry. The aim of this study was to understand the occurrence, molecular traits and antimicrobial resistance patterns of Salmonella Gallinarum strains isolated from small-scale commercial layer flocks with low level biosecurity standards in Bangladesh. A total of 765 samples, including cloacal swabs (535), visceral organs (50), and droppings (180), were collected from chickens of 12 layer flocks in 11 districts. Salmonella Gallinarum was isolated and characterized through culture-based method, followed by biochemical tests, sero-grouping, PCR assays, sequencing, and antibiogram. The identity of biochemically detected isolates of Salmonella Gallinarum was confirmed via genus-specific 16S rRNA gene based PCR, followed by invA and spvC genes based PCR assays. Occurrence of Salmonella Gallinarum was detected in overall 25.75% (197/765) samples, with a significantly (p < 0.05) higher incidence in visceral organs (42%) in comparison to cloacal swab (24%) and droppings (26%). Sequencing and subsequent phylogenetic analysis of invA and spvC genes in representative strains of Salmonella Gallinarum revealed a close genetic lineage, with a sequence similarity of 98.05–99.21% and 97.51–99.45%, respectively, to previously published sequences of the corresponding genes from the same serogroup strains. Remarkably, 66.5% (131/197) of the isolated strains of Salmonella Gallinarum were found to be resistant to 3 to 6 antimicrobial agents, and interpreted as multidrug resistant (MDR). The findings of this study underscore an inherent need of appropriate control measures to curb the widespread incidence of MDR Salmonella Gallinarum in small-scale commercial layer flocks, thereby, facilitating enhanced egg production and further support to the food security and safety in low resource settings.

23 August 2014 in Wetlands Ecology and Management
Verified
Journal Article
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SNSucharit Neogi
Sucharit Neogi
SYShinji Yamasaki
Shinji Yamasaki
MAMunirul Alam
Munirul Alam
RLRubén José Lara
Rubén José Lara

23 January 2025 in Asian-Australasian Journal of Food Safety and Security
Verified
Journal Article
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SNSucharit Neogi
Sucharit Neogi
Not available Asian Australas. J. Food Saf. Secur. 2025, 9(1), 1-4

19 August 2018 in bioRxiv
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SNSucharit Neogi
Sucharit Neogi
NCNityananda Chowdhury
Nityananda Chowdhury
SASharda Prasad Awasthi
Sharda Prasad Awasthi
MAMasahiro Asakura
Masahiro Asakura
ZMZahid Hayat Mahmud
Zahid Hayat Mahmud
SYShinji Yamasaki
Shinji Yamasaki
Atypical El Tor strains of Vibrio cholerae O1 harboring variant ctxB genes of cholera toxin (CT) are gradually becoming a major cause of recent cholera epidemics. Vibrio mimicus occasionally contains virulence factors associated with cholera, e.g., CT, encoded by ctxAB on CTXФ genome; and TCP, the CTXФ-specific receptor. This study carried out extensive molecular characterization of CTXФ and ToxT regulon in ctx +ve strains of V. mimicus isolated from the Bengal coast. Southern hybridization, PCR, and DNA sequencing of virulence related-genes revealed the presence of an El Tor type CTX prophage (CTX ET ) carrying a novel ctxAB , tandem copies of environmental type pre-CTX prophage (pre-CTX Env ), and RS1 elements, which were organized in an array of RS1-CTX ET -RS1-pre-CTX Env -pre-CTX Env . Additionally, a novel variant of tcpA and toxT respectively, showing clonal lineage to a phylogenetic clade of V. cholerae non-O1/O139, was identified. The V. mimicus strains lacked the RTX and TLC elements, and Vibrio seventh pandemic islands of the El Tor strains, but contained five heptamer (TTTTGAT) repeats in ctxAB promoter region like some classical strains of V. cholerae O1. PFGE analysis showed all the ctx +ve V. mimicus strains were clonally related. However, their in vitro CT production and in vivo toxigenecity were variable, which could be explained by differential transcription of virulence genes along with ToxR regulon. Taken together, our findings strongly suggest that environmental V. mimicus strains act as potential reservoir of atypical virulence factors, including variant CT and ToxT regulon, and may contribute to the evolution of V. cholerae hybrid strains. IMPORTANCE: Natural diversification of CTXФ and ctxAB genes certainly influences disease severity and shifting patterns in major etiological agents of cholera, e.g., the overwhelming emergence of hybrid El Tor variants, replacing the prototype El Tor strains of V. cholerae . This study showing the occurrence of CTX ET comprising a novel variant of ctxAB in V. mimicus points out a previously unnoticed evolutionary event, independent to that of the El Tor strains of V. cholerae . Identification and cluster analysis of the newly-discovered alleles of tcpA and toxT indicates their horizontal transfer from an uncommon clone of V. cholerae . The genomic content of ToxT regulon, and tandemly arranged multiple pre-CTXФ Env and a CTXФ ET in V. mimicus probably act as salient raw materials inducing natural recombination among the hallmark virulence genes of hybrid V. cholerae strains. This study will facilitate deeper understanding of the evolution of new variant CT and ToxT regulon, influencing cholera epidemiology.