We applied two numerical methods to in situ hyperspectral measurements of remote sensing reflectance R _rs to assess the feasibility of remote detection and monitoring of the toxic dinoflagellate, Karenia brevis, which has been shown to exhibit unique absorption properties. First, an existing quasi-analytical algorithm was used to invert remote sensing reflectance spectra, $R_{\text{rs}}\left(\lambda \right)$, to derive phytoplankton absorption spectra, $a_{\phi }^{R\text{rs}}\left(\lambda \right)$. Second, the fourth derivatives of the $a_{\phi }^{R\text{rs}}\left(\lambda \right)$ spectra were compared to the fourth derivative of a reference K. brevis absorption spectrum by means of a similarity index (SI) analysis. Comparison of reflectance-derived $a_{\phi }$ with filter pad measured $a_{\phi }$ found them to agree well $(R^2=0.891$; average percentage difference, $22.8\%)$. A strong correlation $\left(R^2=0.743\right)$ between surface cell concentration and the SI was observed, showing the potential utility of SI magnitude as an indicator of bloom strength. A sensitivity analysis conducted to investigate the effects of varying levels of cell concentrations and colored dissolved organic matter (CDOM) on the efficacy of the quasi-analytical algorithm and SI found that $a_{\phi }^{R\text{rs}}\left(\lambda \right)$ could not be derived for very low cell concentrations and that, although it is possible to derive $a_{\phi }^{R\text{rs}}\left(\lambda \right)$ in the presence of high CDOM concentrations, CDOM levels influence the $a_{\phi }^{R\text{rs}}\left(\lambda \right)$ amplitude and shape. Results suggest that detection and mapping of K. brevis blooms based on hyperspectral measurements of $R_{\text{rs}}$ are feasible.

Light emerging from natural water bodies and measured by radiometers contains information about the local type and concentrations of phytoplankton, non-algal particles and colored dissolved organic matter in the underlying waters. An increase in spectral resolution in forthcoming satellite and airborne remote sensing missions is expected to lead to new or improved capabilities for characterizing aquatic ecosystems. Such upcoming missions include NASA's Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission; the NASA Surface Biology and Geology designated observable mission; and NASA Airborne Visible/Infrared Imaging Spectrometer – Next Generation (AVIRIS-NG) airborne missions. In anticipation of these missions, we present an organized dataset of geographically diverse, quality-controlled, high spectral resolution inherent and apparent optical property (IOP–AOP) aquatic data. The data are intended to be of use to increase our understanding of aquatic optical properties, to develop aquatic remote sensing data product algorithms, and to perform calibration and validation activities for forthcoming aquatic-focused imaging spectrometry missions. The dataset is comprised of contributions from several investigators and investigating teams collected over a range of geographic areas and water types, including inland waters, estuaries, and oceans. Specific in situ measurements include remote-sensing reflectance, irradiance reflectance, and coefficients describing particulate absorption, particulate attenuation, non-algal particulate absorption, colored dissolved organic matter absorption, phytoplankton absorption, total absorption, total attenuation, particulate backscattering, and total backscattering. The dataset can be downloaded from https://doi.org/10.1594/PANGAEA.902230 (Casey et al., 2019).

NASA's Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission, scheduled for launch in the time frame of late 2022 to early 2023, will carry the Ocean Color Instrument (OCI), a hyperspectral scanning radiometer, and two multiangle polarimeters (MAPs), the UMBC Hyper-Angular Rainbow Polarimeter 2 (HARP2) and the SRON Spectro-Polarimeter for Planetary EXploration one (SPEXone). One purpose of the PACE MAPs is to better characterize aerosol properties, which can then be used to improve atmospheric correction for the retrieval of ocean color in coastal waters. Though this is theoretically promising, the use of MAP data in the atmospheric correction of colocated hyperspectral ocean color measurements have not yet been well demonstrated. In this work, we performed aerosol retrievals using the MAP measurements from the Research Scanning Polarimeter (RSP) and demonstrate its application to the atmospheric correction of hyperspectral radiometric measurements from SPEX airborne. Both measurements were collected on the same aircraft from the Aerosol Characterization from Polarimeter and Lidar (ACEPOL) field campaign in 2017. Two cases over ocean with small aerosol loading (aerosol optical depth ∼0.04) are identified including colocated RSP and SPEX airborne measurements and Aerosol Robotic Network (AERONET) ground-based observations. The aerosol retrievals are performed and compared with two options: one uses reflectance measurement only and the other uses both reflectance and polarization. It is demonstrated that polarization information helps reduce the uncertainties of aerosol microphysical and optical properties. The retrieved aerosol properties are then used to compute the contribution of atmosphere and ocean surface for atmospheric correction over the discrete bands from RSP measurements and the hyperspectral SPEX airborne measurements. The water-leaving signals determined this way are compared with both AERONET and Moderate Resolution Imaging Spectroradiometer (MODIS) ocean color products for performance analysis. The results and lessons learned from this work will provide a basis to fully exploit the information from the unique combination of sensors on PACE for aerosol characterization and ocean ecosystem research.

Eutrophication is an increasing problem in coastal waters of the Baltic Sea. Moreover, algal blooms, which occur every summer in the Gulf of Gdansk can deleteriously impact human health, the aquatic environment, and economically important fisheries, tourism, and recreation industries. Traditional laboratory-based techniques for water monitoring are expensive and time consuming, which usually results in limited numbers of observations and discontinuity in space and time. The use of hyperspectral radiometers for coastal water observation provides the potential for more detailed remote optical monitoring. A statistical approach to develop local models for the estimation of optically significant components from in situ measured hyperspectral remote sensing reflectance in case 2 waters is presented in this study. The models, which are based on empirical orthogonal function (EOF) analysis and stepwise multilinear regression, allow for the estimation of parameters strongly correlated with phytoplankton (pigment concentration, absorption coefficient) and coloured detrital matter abundance (absorption coefficient) directly from reflectance spectra measured in situ. Chlorophyll a concentration, which is commonly used as a proxy for phytoplankton biomass, was retrieved with low error (median percent difference, MPD = 17%, root mean square error RMSE = 0.14 in log₁₀ space) and showed a high correlation with chlorophyll a measured in situ (R = 0.84). Furthermore, phycocyanin and phycoerythrin, both characteristic pigments for cyanobacteria species, were also retrieved reliably from reflectance with MPD = 23%, RMSE = 0.23, R² = 0.77 and MPD = 24%, RMSE = 0.15, R² = 0.74, respectively. The EOF technique proved to be accurate in the derivation of the absorption spectra of phytoplankton and coloured detrital matter (CDM), with R² (λ) above 0.83 and RMSE around 0.10. The approach was also applied to satellite multispectral remote sensing reflectance data, thus allowing for improved temporal and spatial resolution compared with the in situ measurements. The EOF method tested on simulated Medium Resolution Imaging Spectrometer (MERIS) or Ocean and Land Colour Instrument (OLCI) data resulted in RMSE = 0.16 for chl-a and RMSE = 0.29 for phycocyanin. The presented methods, applied to both in situ and satellite data, provide a powerful tool for coastal monitoring and management.

Empirical methods based on band ratios to infer chlorophyll-a concentration by satellite do not perform well over the optically complex waters of the St. Lawrence Estuary and Gulf. Using a dataset of 93 match-ups, we explore an alternative method relying on empirical orthogonal functions (EOF) to develop an algorithm that relates the satellite-derived remote sensing reflectances to in situ chlorophyll-a concentration for the Sea-viewing Wide Field-of-view Sensor (SeaWiFS). Results show that an accuracy of 41% at retrieving chlorophyll-a concentration can be reached using the EOF method compared to 140% for the widely-used Ocean Chlorophyll 4 (OC4v4) empirical algorithm, 53% for the Garver-Siegel-Maritorena (GSM01) and 54% for the Generalized Inherent Optical Property (GIOP) semi-analytical algorithms. This result is possible because the EOF approach is able to extract region-specific radiometric features from the satellite remote sensing reflectances that are related to absorption properties of optical components (water, coloured dissolved organic matter and chlorophyll-a) using the visible SeaWiFS channels. The method could easily be used with other ocean-colour satellite sensors (e.g., MODIS, MERIS, VIIRS, OLCI) to extend the time series for the St. Lawrence Estuary and Gulf waters.