Achieving sustainable agricultural intensification in inland valleys while limiting the adverse environmental impacts and uncertainties related to water availability requires an analysis of the long-term hydrological behavior of the catchment. Such a task is particularly challenging in West Africa and Benin due to the limited availability of climate and hydrological data. This study evaluates the applicability of the lumped GR4J model for simulating streamflow in three inland valleys of the Sudanian zone of Benin (Lower-Sowé, Bahounkpo and Nalohou). Additionally, we test the reliability of satellite-based rainfall data (GPM-IMERG, CHIRPS or GSMAP) in modeling hydrological dynamics in these small catchments. The results demonstrate that the GR4J model is effective in simulating daily discharge in the three inland valleys (KGE > 0.5 during both calibration and validation periods), with particularly interesting performance in mean-flow conditions. The modeling using GPM-IMERG and GSMAP rainfall data shows mitigated results with acceptable performance at Nalohou and less accurate results at Bahounkpo and Lower-Sowé. CHIRPS emerged as the most consistent among the evaluated products, providing a sound basis for reconstructing general trends and seasonal variations in historical streamflow time series. The approach of combining historical CHIRPS data and the GR4J model provides insights and can support decision-making related to water resource management in terms of resource capacity and volume in the study area. Except for Nalohou (KGE = 0.19 with GPM-IMERG data), we observe limitations in predicting high flows with satellite-based climatic data at Bahounkpo (KGE = 0.02 with GPM-IR) and Lower-Sowé (KGE = −0.01 with CHIRPS), where the near-zero KGE scores indicate marginal improvement over a mean-flow benchmark. Future work should explore how hybrid or flexible modeling approaches can improve the accuracy of runoff simulations in inland valleys, particularly for extreme (low- and high-) flow conditions. Additionally, the analysis of the trends of indicators of hydrological alteration (IHA) must be deepened in these important ecosystems, especially under climate and land-use change scenarios.