The often high Cd concentrations of cacao beans are a serious concern for producers in Latin America due to the implementation of stricter Cd limits for cocoa products by the European Union in 2019. This is the first investigation to employ coupled Cd isotope and concentration measurements to study soil – cacao systems. Analyses were carried out for 29 samples of soils, soil amendments and cacao tree organs from organic farms in Ecuador that harvest three distinct cacao cultivars. The majority of soils from 0–80 cm depth have very similar δ^114/110Cd of about −0.1‰ to 0‰. Two 0–5 cm topsoils, however, have high Cd concentrations coupled with heavy Cd isotope compositions of δ^114/110Cd ≈ 0.2%, possibly indicating Cd additions from the tree litter used as organic fertilizer. Whilst cacao leaves, pods and beans are ubiquitously enriched in Cd relative to soils there are distinct Cd isotope signatures. The leaves and pods are isotopically heavier than the soils, with similar Δ^114/110Cd_leaf–soil values of 0.22 ± 0.07‰ to 0.41 ± 0.09‰. In contrast, the data reveal differences in Δ^114/110Cd_bean–leaf that may be linked to distinct cacao cultivars. In detail, Δ^114/110Cd_bean–leaf values of −0.34‰ to −0.40‰ were obtained for Nacional cacao from two farms, whilst CCN-51 hybrid cacao from a third farm showed no fractionation within error (−0.08 ± 0.13‰). As such, further work to investigate whether Cd isotopes are indeed useful for tracing sources of Cd enrichments in soils and to inform genetic efforts to reduce the Cd burden of cocoa is indicated.

Cacao is an understory plant cultivated in full-sun monocultures, multistrata agroforestry systems, where cacao trees are planted together with fruit, timber, firewood, and leguminous trees, or within thinned native forests. In agroforestry systems of cultivation, cacao is subjected to excess shade due to high density, excess growth, and the unmanaged pruning of shade trees. Cacao is tolerant to shade, and the maximum photosynthetic rate occurs at an irradiance of around 400 μmol m⁻² s⁻¹. However, excess shade further reduces the irradiance, which is detrimental to photosynthesis and growth functions. Intra-specific variation is known to exist in cacao for the required saturation irradiance. A greenhouse study was implemented with 58 cacao genotypes selected from four geographically diverse groups: (i) wild cacao from river basins of the Peruvian Amazon (PWC); (ii) Peruvian farmers’ collection (PFC); (iii) Brazilian cacao collection (BCC); and (iv) national and international cacao collections (NIC). All of the cacao genotypes were subjected to 50% and 80% shade where photosynthetic photon flux density (PPFD) was 1000 and 400 μmol m⁻² s⁻¹, respectively. Intra-specific variations were observed for growth, physiological and nutritional traits, and tolerance to shade. Cacao genotypes tolerant to shade were: UNG-77 and UGU-130 from PWC; ICT-2173, ICT-2142, ICT-2172, ICT-1506, ICT-1087, and ICT-2171 from PFC; PH-21, CA-14, PH-990, and PH-144 from BCC; and ICS-1, ICS-39, UF-613, and POUND-12 from NIC. Genotypes that tolerate excess shade may be useful plant types for maintaining productivity and sustainability in agroforestry systems of cacao management.