Colin Jacobs

Dr. Colin Jacobs

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2017 in Medical Image Analysis
Verified
Journal Article
Open access
ASArnaud Arindra Adiyoso Setio
Arnaud Arindra Adiyoso Setio
ATAlberto Traverso
Alberto Traverso
TBThomas de Bel
Thomas de Bel
MBMoira S.N. Berens
Moira S.N. Berens
CBCas van Den Bogaard
Cas van Den Bogaard
CJColin Jacobs
Colin Jacobs
Automatic detection of pulmonary nodules in thoracic computed tomography (CT) scans has been an active area of research for the last two decades. However, there have only been few studies that provide a comparative performance evaluation of different systems on a common database. We have therefore set up the LUNA16 challenge, an objective evaluation framework for automatic nodule detection algorithms using the largest publicly available reference database of chest CT scans, the LIDC-IDRI data set. In LUNA16, participants develop their algorithm and upload their predictions on 888 CT scans in one of the two tracks: 1) the complete nodule detection track where a complete CAD system should be developed, or 2) the false positive reduction track where a provided set of nodule candidates should be classified. This paper describes the setup of LUNA16 and presents the results of the challenge so far. Moreover, the impact of combining individual systems on the detection performance was also investigated. It was observed that the leading solutions employed convolutional networks and used the provided set of nodule candidates. The combination of these solutions achieved an excellent sensitivity of over 95% at fewer than 1.0 false positives per scan. This highlights the potential of combining algorithms to improve the detection performance. Our observer study with four expert readers has shown that the best system detects nodules that were missed by expert readers who originally annotated the LIDC-IDRI data. We released this set of additional nodules for further development of CAD systems.

1 March 2016 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
ASArnaud Arindra Adiyoso Setio
Arnaud Arindra Adiyoso Setio
FCFrancesco Ciompi
Francesco Ciompi
GLGeert Litjens
Geert Litjens
PGPaul Gerke
Paul Gerke
CJColin Jacobs
Colin Jacobs
BGBram van Ginneken
Bram van Ginneken
We propose a novel Computer-Aided Detection (CAD) system for pulmonary nodules using multi-view convolutional networks (ConvNets), for which discriminative features are automatically learnt from the training data. The network is fed with nodule candidates obtained by combining three candidate detectors specifically designed for solid, subsolid, and large nodules. For each candidate, a set of 2-D patches from differently oriented planes is extracted. The proposed architecture comprises multiple streams of 2-D ConvNets, for which the outputs are combined using a dedicated fusion method to get the final classification. Data augmentation and dropout are applied to avoid overfitting. On 888 scans of the publicly available LIDC-IDRI dataset, our method reaches high detection sensitivities of 85.4% and 90.1% at 1 and 4 false positives per scan, respectively. An additional evaluation on independent datasets from the ANODE09 challenge and DLCST is performed. We showed that the proposed multi-view ConvNets is highly suited to be used for false positive reduction of a CAD system.

19 April 2017 in Scientific Reports
Verified
Journal Article
Open access
PDF file
FCFrancesco Ciompi
Francesco Ciompi
KCKaman Chung
Kaman Chung
SRSarah J. van Riel
Sarah J. van Riel
ASArnaud Arindra Adiyoso Setio
Arnaud Arindra Adiyoso Setio
PGPaul K. Gerke
Paul K. Gerke
BGBram van Ginneken
Bram van Ginneken
The introduction of lung cancer screening programs will produce an unprecedented amount of chest CT scans in the near future, which radiologists will have to read in order to decide on a patient follow-up strategy. According to the current guidelines, the workup of screen-detected nodules strongly relies on nodule size and nodule type. In this paper, we present a deep learning system based on multi-stream multi-scale convolutional networks, which automatically classifies all nodule types relevant for nodule workup. The system processes raw CT data containing a nodule without the need for any additional information such as nodule segmentation or nodule size and learns a representation of 3D data by analyzing an arbitrary number of 2D views of a given nodule. The deep learning system was trained with data from the Italian MILD screening trial and validated on an independent set of data from the Danish DLCST screening trial. We analyze the advantage of processing nodules at multiple scales with a multi-stream convolutional network architecture, and we show that the proposed deep learning system achieves performance at classifying nodule type that surpasses the one of classical machine learning approaches and is within the inter-observer variability among four experienced human observers.

1 February 2014 in Medical Image Analysis
Verified
Journal Article
Closed access
CJColin Jacobs
Colin Jacobs
EREva M. van Rikxoort
Eva M. van Rikxoort
TTThorsten Twellmann
Thorsten Twellmann
ESErnst Th. Scholten
Ernst Th. Scholten
PJPim A. de Jong
Pim A. de Jong
BGBram van Ginneken
Bram van Ginneken

1 August 2021 in Radiology
Verified
Journal Article
Closed access
KVKiran Vaidhya Venkadesh
Kiran Vaidhya Venkadesh
ASArnaud A. A. Setio
Arnaud A. A. Setio
ASAnton Schreuder
Anton Schreuder
ESErnst T. Scholten
Ernst T. Scholten
KCKaman Chung
Kaman Chung
CJColin Jacobs
Colin Jacobs
A deep learning algorithm, developed for malignancy risk estimation of pulmonary nodules detected at screening CT, demonstrated good discriminative performance in a large independent validation set. Background Accurate estimation of the malignancy risk of pulmonary nodules at chest CT is crucial for optimizing management in lung cancer screening. Purpose To develop and validate a deep learning...

1 December 2015 in Radiology
Verified
Journal Article
Closed access
SRSarah J. van Riel
Sarah J. van Riel
CSClara I. Sánchez
Clara I. Sánchez
ABAlexander A. Bankier
Alexander A. Bankier
DNDavid P. Naidich
David P. Naidich
JVJohnny Verschakelen
Johnny Verschakelen
CSCornelia Schaefer-Prokop
Cornelia Schaefer-Prokop
To examine the factors that affect inter- and intraobserver agreement for pulmonary nodule type classification on low-radiation-dose computed tomographic (CT) images, and their potential effect on patient management. Nodules (n = 160) were randomly selected from the Dutch-Belgian Lung Cancer Screening Trial cohort, with equal numbers of nodule types and similar sizes. Nodules were scored by eight radiologists by using morphologic categories proposed by the Fleischner Society guidelines for management of pulmonary nodules as solid, part solid with a solid component smaller than 5 mm, part solid with a solid component 5 mm or larger, or pure ground glass. Inter- and intraobserver agreement was analyzed by using Cohen κ statistics. Multivariate analysis of variance was performed to assess the effect of nodule characteristics and image quality on observer disagreement. Effect on nodule management was estimated by differentiating CT follow-up for ground-glass nodules, solid nodules 8 mm or smaller, and part-solid nodules smaller than 5 mm from immediate diagnostic work-up for solid nodules larger than 8 mm and part-solid nodules 5 mm or greater. Pair-wise inter- and intraobserver agreement was moderate (mean κ, 0.51 [95% confidence interval, 0.30, 0.68] and 0.57 [95% confidence interval, 0.47, 0.71]). Categorization as part-solid nodules and location in the upper lobe significantly reduced observer agreement (P = .012 and P < .001, respectively). By considering all possible reading pairs (28 possible combinations of observer pairs × 160 nodules = 4480 possible agreements or disagreements), a discordant nodule classification was found in 36.4% (1630 of 4480), related to presence or size of a solid component in 88.7% (1446 of 1630). Two-thirds of these discrepant readings (1061 of 1630) would have potentially resulted in different nodule management. There is moderate inter- and intraobserver agreement for nodule classification by using current recommendations for low-radiation-dose CT examinations of the chest. Discrepancies in nodule categorization were mainly caused by disagreement on the size and presence of a solid component, which may lead to different management in the majority of cases with such discrepancies. (©) RSNA, 2015.