Breast cancer is diagnosed using histopathological imaging. This task is extremely time-consuming due to high image complexity and volume. However, it is important to facilitate the early detection of breast cancer for medical intervention. Deep learning (DL) has become popular in medical imaging solutions and has demonstrated various levels of performance in diagnosing cancerous images. Nonetheless, achieving high precision while minimizing overfitting remains a significant challenge for classification solutions. The handling of imbalanced data and incorrect labeling is a further concern. Additional methods, such as pre-processing, ensemble, and normalization techniques, have been established to enhance image characteristics. These methods could influence classification solutions and be used to overcome overfitting and data balancing issues. Hence, developing a more sophisticated DL variant could improve classification accuracy while reducing overfitting. Technological advancements in DL have fueled automated breast cancer diagnosis growth in recent years. This paper reviewed studies on the capability of DL to classify histopathological breast cancer images, as the objective of this study was to systematically review and analyze current research on the classification of histopathological images. Additionally, literature from the Scopus and Web of Science (WOS) indexes was reviewed. This study assessed recent approaches for histopathological breast cancer image classification in DL applications for papers published up until November 2022. The findings of this study suggest that DL methods, especially convolution neural networks and their hybrids, are the most cutting-edge approaches currently in use. To find a new technique, it is necessary first to survey the landscape of existing DL approaches and their hybrid methods to conduct comparisons and case studies.
An automatic detection of histopathological images has an important role in helping diagnose step. Even, for determining the status of cancer, benign or malignant A conventional way in cancer detection has infirmity like user dependency, the tendency to the incorrect identification and takes more time. Convolutional Neural Network (CNN) is one of the deep learning architecture that can accommodate automatic feature extraction and classification directly. The ability of CNN to extract a feature of an image in depth underlie our research. The research aims to classify the two statuses of cancer on gland images using CNN. The training process for six, eight and ten layers exploited on this research. The accuracy obtained up to 82.98, 81.91 and 89.36 percent for six, eight and ten layers respectively. But in the future, we need to improve the computing time.
17 May 2017 in Journal of Physics: Conference Series
Detection of complexes, or groups of functionally related proteins, is an importantchallenge while analysing biological networks. However, existing algorithms to identify protein complexes are insufficient whenapplied to dense networks of experimentally derived interaction data. Therefore, we introduced a graph clustering method based on Markov clustering algorithm to identify protein complex within highly interconnected protein-protein interaction networks. Protein-protein interaction network was first constructed to develop geometrical network, the network was then partitioned using Markov clustering to detect protein complexes. The interest of the proposed method was illustrated by its application to Human Proteins associated to type II diabetes mellitus. Flow simulation of MCL algorithm was initially performed and topological properties of the resultant network were analysed for detection of the protein complex. The results indicated the proposed method successfully detect an overall of 34 complexes with 11 complexes consisting of overlapping modules and 20 nonoverlapping modules. The major complex consisted of 102 proteins and 521 interactions with cluster modularity and density of 0.745 and 0.101 respectively. The comparison analysis revealed MCL outperform AP, MCODE and SCPS algorithms withhigh clustering coefficient (0.751) network density and modularity index (0.630).This demonstrated MCL was the most reliable and efficient graph clustering algorithm for detection of protein complexes from PPI networks.
17 May 2017 in Journal of Physics: Conference Series
Protein is one of the giant biomolecules that act as the main component of the organism. Protein is formed from building blocks namely amino acids. Hierarchically, the structure of protein is divided into four levels: primary, secondary, tertiary, and quaternary structure. Protein secondary structure is formed by amino acid sequences that would form three-dimensional structures and have information about the tertiary structure and function of proteins. This study used 277,389 protein residue data from enzyme categories. Position-specific scoring matrix (PSSM) profile and physicochemical are used for features. This study developed support vector machine models to predict the protein secondary structure by recognizing patterns of amino acid sequences. The Q3 results showed that the best scores obtained are 93.16% from the dataset that has 260 features with the radial kernel. Combining PSSM and physicochemical feature additions can be used for prediction.