Protein-protein interactions (PPIs) play crucial roles in the execution of various cellular processes and form the basis of biological mechanisms. Although large amount of PPIs data for different species has been generated by high-throughput experimental techniques, current PPI pairs obtained with experimental methods cover only a fraction of the complete PPI networks, and further, the experimental methods for identifying PPIs are both time-consuming and expensive. Hence, it is urgent and challenging to develop automated computational methods to efficiently and accurately predict PPIs.

Regarding the growth of crops, one of the important factors affecting crop yield is insect disasters. Since most insect species are extremely similar, insect detection on field crops, such as rice, soybean and other crops, is more challenging than generic object detection. Presently, distinguishing insects in crop fields mainly relies on manual classification, but this is an extremely time-consuming and expensive process. This work proposes a convolutional neural network model to solve the problem of multi-classification of crop insects. The model can make full use of the advantages of the neural network to comprehensively extract multifaceted insect features. During the regional proposal stage, the Region Proposal Network is adopted rather than a traditional selective search technique to generate a smaller number of proposal windows, which is especially important for improving prediction accuracy and accelerating computations. Experimental results show that the proposed method achieves a heightened accuracy and is superior to the state-of-the-art traditional insect classification algorithms.

Plant leaf diseases are closely related to people’s daily life. Due to the wide variety of diseases, it is not only time-consuming and labor-intensive to identify and classify diseases by artificial eyes, but also easy to be misidentified with having a high error rate. Therefore, we proposed a deep learning-based method to identify and classify plant leaf diseases. The proposed method can take the advantages of the neural network to extract the characteristics of diseased parts, and thus to classify target disease areas. To address the issues of long training convergence time and too-large model parameters, the traditional convolutional neural network was improved by combining a structure of inception module, a squeeze-and-excitation (SE) module and a global pooling layer to identify diseases. Through the Inception structure, the feature data of the convolutional layer were fused in multi-scales to improve the accuracy on the leaf disease dataset. Finally, the global average pooling layer was used instead of the fully connected layer to reduce the number of model parameters. Compared with some traditional convolutional neural networks, our model yielded better performance and achieved an accuracy of 91.7% on the test data set. At the same time, the number of model parameters and training time have also been greatly reduced. The experimental classification on plant leaf diseases indicated that our method is feasible and effective.

Scab, frogeye spot, and cedar rust are three common types of apple leaf diseases, and the rapid diagnosis and accurate identification of them play an important role in the development of apple production. In this work, an improved model based on VGG16 is proposed to identify apple leaf diseases, in which the global average poling layer is used to replace the fully connected layer to reduce the parameters and a batch normalization layer is added to improve the convergence speed. A transfer learning strategy is used to avoid a long training time. The experimental results show that the overall accuracy of apple leaf classification based on the proposed model can reach 99.01%. Compared with the classical VGG16, the model parameters are reduced by 89%, the recognition accuracy is improved by 6.3%, and the training time is reduced to 0.56% of that of the original model. Therefore, the deep convolutional neural network model proposed in this work provides a better solution for the identification of apple leaf diseases with higher accuracy and a faster convergence speed.