Trunk diameter is a fundamental structural trait used to quantify tree size, vigor, and long-term growth in orchard systems, yet it remains difficult to measure efficiently at orchard scale. This study developed and validated a low-cost mobile imaging system that integrates RGB-D cameras, object detection, deep-learning segmentation, and driveline-based digital odometry to estimate trunk diameter and map structural variation across tart cherry (Prunus cerasus) orchards. Trunks were detected using a YOLO-based model, segmented with a SAM-derived mask, and reconstructed in 3D from depth data to extract real-world diameter at 40 cm above the graft union. A variable-reluctance sensor, mounted on the transmission output, provided odometry-based distance measurements for spatial mapping under canopy conditions where GNSS performance was unreliable. In a 12-year-old, 1 ha experimental orchard, in Utah, USA, trunk diameter estimates showed strong agreement with manual measurements when unobstructed views were available, with a mean absolute error (MAE) of 0.95 cm, root mean square error of 1.16 cm, and R2 of 0.79. Across all 462 trees, automated per-tree averaging produced an MAE of 1.40 cm. In a 14-year-old, 9.5 ha commercial orchard, trunk diameter patterns aligned with UAV-derived canopy height, reflecting underlying zones of tree vigor. These results demonstrate that mobile RGB-D imaging combined with driveline-based odometry can reliably estimate trunk diameter at orchard scale, supporting practical, cost-effective structural mapping for precision horticulture.