David Smith

Dr. David Smith

Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 October 2017 in Journal of Physics D: Applied Physics
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Journal Article
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LOLinda Oswald
Linda Oswald
SGSteffen Grosser
Steffen Grosser
DSDavid Smith
David Smith
JKJosef Alfons Käs
Josef Alfons Käs
The traditional picture of tissues, where they are treated as liquids defined by properties such as surface tension or viscosity has been redefined during the last few decades by the more fundamental question: under which conditions do tissues display liquid-like or solid-like behaviour? As a result, basic concepts arising from the treatment of tissues as solid matter, such as cellular jamming and glassy tissues, have shifted into the current focus of biophysical research. Here, we review recent works examining the phase states of tissue with an emphasis on jamming transitions in cancer. When metastasis occurs, cells gain the ability to leave the primary tumour and infiltrate other parts of the body. Recent studies have shown that a linkage between an unjamming transition and tumour progression indeed exists, which could be of importance when designing surgery and treatment approaches for cancer patients.

4 March 2020 in Small
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Journal Article
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YXYang Xin
Yang Xin
CKCharlotte Kielar
Charlotte Kielar
SZSiqi Zhu
Siqi Zhu
CSChristoph Sikeler
Christoph Sikeler
XXXiaodan Xu
Xiaodan Xu
AKAdrian Keller
Adrian Keller
Although DNA origami nanostructures have found their way into numerous fields of fundamental and applied research, they often suffer from rather limited stability when subjected to environments that differ from the employed assembly conditions, that is, suspended in Mg2+‐containing buffer at moderate temperatures. Here, means for efficient cryopreservation of 2D and 3D DNA origami nanostructures and, in particular, the effect of repeated freezing and thawing cycles are investigated. It is found that, while the 2D DNA origami nanostructures maintain their structural integrity over at least 32 freeze–thaw cycles, ice crystal formation makes the DNA origami gradually more sensitive toward harsh sample treatment conditions. Whereas no freeze damage could be detected in 3D DNA origami nanostructures subjected to 32 freeze–thaw cycles, 1000 freeze–thaw cycles result in significant fragmentation. The cryoprotectants glycerol and trehalose are found to efficiently protect the DNA origami nanostructures against freeze damage at concentrations between 0.2 × 10−3 and 200 × 10−3 m and without any negative effects on DNA origami shape. This work thus provides a basis for the long‐term storage of DNA origami nanostructures, which is an important prerequisite for various technological and medical applications.

31 October 2016 in Physical Review Letters
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Journal Article
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CSCarsten Schuldt
Carsten Schuldt
JSJörg Schnauß
Jörg Schnauß
THTina Händler
Tina Händler
MGMartin Glaser
Martin Glaser
JLJessica Lorenz
Jessica Lorenz
DSDavid Smith
David Smith
The mechanics of complex soft matter often cannot be understood in the classical physical frame of flexible polymers or rigid rods. The underlying constituents are semiflexible polymers, whose finite bending stiffness (κ) leads to nontrivial mechanical responses. A natural model for such polymers is the protein actin. Experimental studies of actin networks, however, are limited since the persistence length (lp∝κ) cannot be tuned. Here, we experimentally characterize this parameter for the first time in entangled networks formed by synthetically produced, structurally tunable DNA nanotubes. This material enabled the validation of characteristics inherent to semiflexible polymers and networks thereof, i.e., persistence length, inextensibility, reptation, and mesh size scaling. While the scaling of the elastic plateau modulus with concentration G0∝c7/5 is consistent with previous measurements and established theories, the emerging persistence length scaling G0∝lp opposes predominant theoretical predictions.

15 February 2018 in Advanced Materials
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JLJessica S. Lorenz
Jessica S. Lorenz
JSJörg Schnauß
Jörg Schnauß
MGMartin Glaser
Martin Glaser
MSMartin Sajfutdinow
Martin Sajfutdinow
CSCarsten Schuldt
Carsten Schuldt
DSDavid Smith
David Smith
Actin networks are adaptive materials enabling dynamic and static functions of living cells. A central element for tuning their underlying structural and mechanical properties is the ability to reversibly connect, i.e., transiently crosslink, filaments within the networks. Natural crosslinkers, however, vary across many parameters. Therefore, systematically studying the impact of their fundamental properties like size and binding strength is unfeasible since their structural parameters cannot be independently tuned. Herein, this problem is circumvented by employing a modular strategy to construct purely synthetic actin crosslinkers from DNA and peptides. These crosslinkers mimic both intuitive and noncanonical mechanical properties of their natural counterparts. By isolating binding affinity as the primary control parameter, effects on structural and dynamic behaviors of actin networks are characterized. A concentration‐dependent triphasic behavior arises from both strong and weak crosslinkers due to emergent structural polymorphism. Beyond a certain threshold, strong binding leads to a nonmonotonic elastic pulse, which is a consequence of self‐destruction of the mechanical structure of the underlying network. The modular design also facilitates an orthogonal regulatory mechanism based on enzymatic cleaving. This approach can be used to guide the rational design of further biomimetic components for programmable modulation of the properties of biomaterials and cells.

15 April 2021 in Molecules
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MGMartin Glaser
Martin Glaser
Sourav DebSourav Deb
Sourav Deb
FSFlorian Seier
Florian Seier
AAAmay Agrawal
Amay Agrawal
TLTim Liedl
Tim Liedl
DSDavid Smith
David Smith
Since the arrival of DNA nanotechnology nearly 40 years ago, the field has progressed from its beginnings of envisioning rather simple DNA structures having a branched, multi-strand architecture into creating beautifully complex structures comprising hundreds or even thousands of unique strands, with the possibility to exactly control the positions down to the molecular level. While the earliest construction methodologies, such as simple Holliday junctions or tiles, could reasonably be designed on pen and paper in a short amount of time, the advent of complex techniques, such as DNA origami or DNA bricks, require software to reduce the time required and propensity for human error within the design process. Where available, readily accessible design software catalyzes our ability to bring techniques to researchers in diverse fields and it has helped to speed the penetration of methods, such as DNA origami, into a wide range of applications from biomedicine to photonics. Here, we review the historical and current state of CAD software to enable a variety of methods that are fundamental to using structural DNA technology. Beginning with the first tools for predicting sequence-based secondary structure of nucleotides, we trace the development and significance of different software packages to the current state-of-the-art, with a particular focus on programs that are open source.

29 April 2016 in New Journal of Physics
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Journal Article
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MGMartin Glaser
Martin Glaser
JSJörg Schnauß
Jörg Schnauß
TTTeresa Tschirner
Teresa Tschirner
BSB U Sebastian Schmidt
B U Sebastian Schmidt
MMMaximilian Moebius-Winkler
Maximilian Moebius-Winkler
DSDavid Smith
David Smith
Formation of regularly spaced networks as a general feature of actin bundle condensation by entropic forces