Fatih Kocabas

Prof. Dr. Fatih Kocabas

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2010 in Cell Stem Cell
Verified
Journal Article
Closed access
TSTugba Simsek
Tugba Simsek
FKFatih Kocabas
Fatih Kocabas
JZJunke Zheng
Junke Zheng
RDRalph J. DeBerardinis
Ralph J. DeBerardinis
AMAhmed I. Mahmoud
Ahmed I. Mahmoud
HSHesham A. Sadek
Hesham A. Sadek

17 April 2013 in Nature
Verified
Journal Article
Closed access
PDF file
AMAhmed I. Mahmoud
Ahmed I. Mahmoud
FKFatih Kocabas
Fatih Kocabas
SMShalini A. Muralidhar
Shalini A. Muralidhar
WKWataru Kimura
Wataru Kimura
AKAhmed S. Koura
Ahmed S. Koura
HSHesham Sadek
Hesham Sadek

13 December 2012 in Blood
Verified
Journal Article
Open access
PDF file
FKFatih Kocabas
Fatih Kocabas
JZJunke Zheng
Junke Zheng
STSuwannee Thet
Suwannee Thet
NCNeal G. Copeland
Neal G. Copeland
NJNancy A. Jenkins
Nancy A. Jenkins
HSHesham Sadek
Hesham Sadek
The role of Meis1 in leukemia is well established, but its role in hematopoietic stem cells (HSCs) remains poorly understood. Previously, we showed that HSCs use glycolytic metabolism to meet their energy demands. However, the mechanism of regulation of HSC metabolism, and the importance of maintaining this distinct metabolic phenotype on HSC function has not been determined. More importantly, the primary function of Meis1 in HSCs remains unknown. Here, we examined the effect of loss of Meis1 on HSC function and metabolism. Inducible Meis1 deletion in adult mouse HSCs resulted in loss of HSC quiescence, and failure of bone marrow repopulation after transplantation. While we previously showed that Meis1 regulates Hif-1α transcription in vitro, we demonstrate here that loss of Meis1 results in down-regulation of both Hif-1α and Hif-2α in HSCs. This resulted in a shift to mitochondrial metabolism, increased reactive oxygen species production, and apoptosis of HSCs. Finally, we demonstrate that the effect of Meis1 knockout on HSCs is entirely mediated through reactive oxygen species where treatment of the Meis1 knockout mice with the scavenger N-acetylcystein restored HSC quiescence and rescued HSC function. These results uncover an important transcriptional network that regulates metabolism, oxidant defense, and maintenance of HSCs.

24 July 2015 in EMBO Reports
Verified
Journal Article
Open access
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PRPauline Rimmelé
Pauline Rimmelé
RLRaymond Liang
Raymond Liang
CBCarolina L Bigarella
Carolina L Bigarella
FKFatih Kocabas
Fatih Kocabas
JXJingjing Xie
Jingjing Xie
SGSaghi Ghaffari
Saghi Ghaffari
Hematopoietic stem cells (HSC) are primarily dormant but have the potential to become highly active on demand to reconstitute blood. This requires a swift metabolic switch from glycolysis to mitochondrial oxidative phosphorylation. Maintenance of low levels of reactive oxygen species (ROS), a by‐product of mitochondrial metabolism, is also necessary for sustaining HSC dormancy. Little is known about mechanisms that integrate energy metabolism with hematopoietic stem cell homeostasis. Here, we identify the transcription factor FOXO3 as a new regulator of metabolic adaptation of HSC. ROS are elevated in Foxo3−/−HSC that are defective in their activity. We show that Foxo3−/−HSC are impaired in mitochondrial metabolism independent of ROS levels. These defects are associated with altered expression of mitochondrial/metabolic genes in Foxo3−/− hematopoietic stem and progenitor cells (HSPC). We further show that defects of Foxo3−/−HSC long‐term repopulation activity are independent of ROS or mTOR signaling. Our results point to FOXO3 as a potential node that couples mitochondrial metabolism with HSC homeostasis. These findings have critical implications for mechanisms that promote malignant transformation and aging of blood stem and progenitor cells. Synopsis FOXO3 regulates oxidative stress in LT‐HSC, which are highly sensitive to increased reactive oxygen species. However, while the impaired function of Foxo3−/−LT‐HSC is associated with defective mitochondrial metabolism, it is not mediated by oxidative stress or mTOR signaling. Mitochondrial metabolism is impaired in Foxo3−/− LT‐HSCs. Defects in Foxo3−/−LT‐HSC activity in vivo or Foxo3−/−LT‐HSC mitochondrial function are not mediated by oxidative stress.

11 June 2013 in eLife
Verified
Journal Article
Open access
SSSheng Min Shih
Sheng Min Shih
BEBenjamin D Engel
Benjamin D Engel
FKFatih Kocabas
Fatih Kocabas
TBThomas Bilyard
Thomas Bilyard
AGArne Gennerich
Arne Gennerich
AYAhmet Yildiz
Ahmet Yildiz
The assembly and maintenance of all cilia and flagella require intraflagellar transport (IFT) along the axoneme. IFT has been implicated in sensory and motile ciliary functions, but the mechanisms of this relationship remain unclear. Here, we used Chlamydomonas flagellar surface motility (FSM) as a model to test whether IFT provides force for gliding of cells across solid surfaces. We show that IFT trains are coupled to flagellar membrane glycoproteins (FMGs) in a Ca2+-dependent manner. IFT trains transiently pause through surface adhesion of their FMG cargos, and dynein-1b motors pull the cell towards the distal tip of the axoneme. Each train is transported by at least four motors, with only one type of motor active at a time. Our results demonstrate the mechanism of Chlamydomonas gliding motility and suggest that IFT plays a major role in adhesion-induced ciliary signaling pathways.

13 June 2013 in Molecular Pharmaceutics
Verified
Journal Article
Closed access
ABAli O. Boztas
Ali O. Boztas
OKOzgur Karakuzu
Ozgur Karakuzu
GGGabriela Galante
Gabriela Galante
ZUZafer Ugur
Zafer Ugur
FKFatih Kocabas
Fatih Kocabas
AYA. Ozgur Yazaydin
A. Ozgur Yazaydin