Pigeonpea is an important economic crop in the world and is mainly distributed in tropical and subtropical regions. In order to further expand the scope of planting, one of the problems that must be solved is the impact of soil acidity on plants in these areas. Based on our previous work, we constructed a time series RNA sequencing (RNA-seq) analysis under aluminum (Al) stress in pigeonpea. Through a comparison analysis, 11,425 genes were found to be differentially expressed among all the time points. After clustering these genes by their expression patterns, 12 clusters were generated. Many important functional pathways were identified by gene ontology (GO) analysis, such as biological regulation, localization, response to stimulus, metabolic process, detoxification, and so on. Further analysis showed that metabolic pathways played an important role in the response of Al stress. Thirteen out of the 23 selected genes related to flavonoids and phenols were downregulated in response to Al stress. In addition, we verified these key genes of flavonoid- and phenol-related metabolism pathways by qRT-PCR. Collectively, our findings not only revealed the regulation mechanism of pigeonpea under Al stress but also provided methodological support for further exploration of plant stress regulation mechanisms.

Sugar, acting as a signal, can regulate the production of some chemical substance during plant defense responses. However, the molecular basis and regulatory mechanisms of sugar in poplar and other forest trees are still unclear. Sorbitol is a sugar-signaling molecule associated with plant defense. In this study, the pathogen-infested status of poplar was alleviated after exogenous feeding of 50 mM sorbitol. We sequenced and analyzed the transcriptome of poplar leaves before and after inoculation. The results showed that the genes PR1, WRKY, ceramide kinases (CERK) and so on responded to sorbitol feeding and pathogen infestation. We screened for genes related to disease resistance such as PsWRKY25 and PsCERK1 and found that significant disease spots occurred on day six of strep throat infestation. Under sorbitol feeding conditions, the appearance of spots was delayed after the pathogen inoculation. Due to the overexpression of PsWRKY25, the overexpression of PsCERK1 triggered the defense response in poplar. This was also confirmed by PsWRKY25 overexpression experiments. These findings present new insights into the influence of sorbitol on Populus simonii Carr. disease resistance. These results emphasize the value of molecular phenotypes in predicting physiological changes.

Rapid climate shifts in high-latitude regions profoundly impact the geographical distribution boundaries and molecular adaptive strategies of cold-tolerant plants. Lonicera caerulea, known for its excellent cold tolerance, provides an ideal model for exploring the molecular mechanisms of climate adaptation and trait formation. To elucidate the ecological and molecular mechanisms of climate adaptation in L. caerulea, we integrated species distribution modeling with multi-tissue transcriptome profiling. Distribution modeling identified temperature and precipitation as primary constraints on its current range, with projections suggesting a significant poleward expansion under future warming scenarios. At the molecular level, we identified 19 LcSWEET genes exhibiting functional differentiation. Rather than listing specific candidates, our findings highlight that certain LcSWEET members are transcriptionally activated during fruit maturation, while others are significantly upregulated in response to cold stress, underscoring their dual roles in plant reproduction and ecological adaptation. This study revealed that the LcSWEET gene family exhibits functional diversification in tissue-specific expression and low-temperature stress response. It provides molecular candidates that may inform future studies on plant adaptive response under climate change and lays a theoretical foundation for germplasm conservation and high-quality breeding of L. caerulea.