Wim M S Degrave

Dr. Wim M S Degrave

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
10 October 2018 in BMC Medical Education
Verified
Journal Article
Open access
PDF file
GPGoonaseelan Pillai
Goonaseelan Pillai
KCKelly Chibale
Kelly Chibale
Edwin Charles ConstableEdwin Charles Constable
Edwin Charles Constable
AKAkiko N. Keller
Akiko N. Keller
MGMarcelo M. Gutierrez
Marcelo M. Gutierrez
HKHedwig J. Kaiser
Hedwig J. Kaiser
Scientific and professional development opportunities for early career scientists in low- and middle- income countries (LMICs) are limited and not consistent. There is a disproportionately low number of biomedical and clinical researchers in LMIC’s relative to their high burden of disease, a disparity that is aggravated by emigration of up to 70% of scientists from their countries of birth for education and employment elsewhere. To help address this need, a novel University-accredited, immersive fellowship program was established by a large public-academic-private network. We sought to describe the program and summarize progress and lessons learned over its first 7-years. Hallmarks of the program are a structured learning curriculum and bespoke research activities tailored to the needs of each fellow. Research projects expose the scientists to state-of-the-art methodologies and leading experts in their fields while also ensuring that learnings are implementable within their home infrastructure. Fellows run seminars on drug discovery and development that reinforce themes of scientific leadership and teamwork together with practical modules on addressing healthcare challenges within their local systems. Industry mentors achieve mutual learning to better understand healthcare needs in traditionally underserved settings. We evaluated the impact of the program through an online survey of participants and by assessing research output. More than 140 scientists and clinicians from 25 countries participated over the 7-year period. Evaluation revealed strong evidence of knowledge and skills transfer, and beneficial self-reported impact on fellow’s research output and career trajectories. Examples of program impact included completion of post-graduate qualifications; establishment and implementation of good laboratory- and clinical- practice mechanisms; and becoming lead investigators in local programs. There was a high retention of fellows in their home countries (> 75%) and an enduring professional network among the fellows and their mentors. Our experience demonstrates an example for how multi-sectoral partners can contribute to scientific and professional development of researchers in LMICs and supports the idea that capacity-building efforts should be tailored to the specific needs of beneficiaries to be maximally effective. Lessons learned may be applied to the design and conduct of other programs to strengthen science ecosystems in LMICs.

Verified
Journal Article
Open access
PDF file
RARayane Silva Abreu
Rayane Silva Abreu
DADeborah Antunes
Deborah Antunes
AMAline dos Santos Moreira
Aline dos Santos Moreira
FPFabio Passetti
Fabio Passetti
JMJulia Badaró Mendonça
Julia Badaró Mendonça
MWMariana Caldas Waghabi
Mariana Caldas Waghabi
Ovarian cancer is among the seven most common types of cancer in women, being the most fatal gynecological tumor, due to the difficulty of detection in early stages. Aptamers are important tools to improve tumor diagnosis through the recognition of specific molecules produced by tumors. Here, aptamers and their potential targets in ovarian cancer cells were analyzed by in silico approaches. Specific aptamers were selected by the Cell-SELEX method using Caov-3 and OvCar-3 cells. The five most frequent aptamers obtained from the last round of selection were computationally modeled. The potential targets for those aptamers in cells were proposed by analyzing proteomic data available for the Caov-3 and OvCar-3 cell lines. Overexpressed proteins for each cell were characterized as to their three-dimensional model, cell location, and electrostatic potential. As a result, four specific aptamers for ovarian tumors were selected: AptaC2, AptaC4, AptaO1, and AptaO2. Potential targets were identified for each aptamer through Molecular Docking, and the best complexes were AptaC2-FXYD3, AptaC4-ALPP, AptaO1-TSPAN15, and AptaO2-TSPAN15. In addition, AptaC2 and AptaO1 could detect different stages and subtypes of ovarian cancer tissue samples. The application of this technology makes it possible to propose new molecular biomarkers for the differential diagnosis of epithelial ovarian cancer.

Verified
Journal Article
Open access
PDF file
NANatassia Araujo
Natassia Araujo
AMAline dos Santos Moreira
Aline dos Santos Moreira
RARayane Silva Abreu
Rayane Silva Abreu
VJValdemir Vargas Junior
Valdemir Vargas Junior
DADeborah Antunes
Deborah Antunes
MWMariana Caldas Waghabi
Mariana Caldas Waghabi
Breast cancer is one of the leading causes of death among women worldwide and can be classified into four major distinct molecular subtypes based on the expression of specific receptors. Despite significant advances, the lack of biomarkers for detailed diagnosis and prognosis remains a major challenge in the field of oncology. This study aimed to identify short single-stranded oligonucleotides known as aptamers to improve breast cancer diagnosis. The Cell-SELEX technique was used to select aptamers specific to the MDA-MB-231 tumor cell line. After selection, five aptamers demonstrated specific recognition for tumor breast cell lines and no binding to non-tumor breast cells. Validation of aptamer specificity revealed recognition of primary and metastatic tumors of all subtypes. In particular, AptaB4 and AptaB5 showed greater recognition of primary tumors and metastatic tissue, respectively. Finally, a computational biology approach was used to identify potential aptamer targets, which indicated that CSKP could interact with AptaB4. These results suggest that aptamers are promising in breast cancer diagnosis and treatment due to their specificity and selectivity.

4 March 2025 in Journal of Fungi
Verified
Journal Article
Open access
PDF file
TPTatiana Prado
Tatiana Prado
WDWim M S Degrave
Wim M S Degrave
GDGabriela Frois Duarte
Gabriela Frois Duarte
Lichens are an important vegetative component of the Antarctic terrestrial ecosystem and present a wide diversity. Recent advances in omics technologies have allowed for the identification of lichen microbiomes and the complex symbiotic relationships that contribute to their survival mechanisms under extreme conditions. The preservation of biodiversity and genetic resources is fundamental for the balance of ecosystems and for human and animal health. In order to assess the current knowledge on Antarctic lichens, we carried out a systematic review of the international applied research published between January 2019 and February 2024, using the PRISMA model (Preferred Reporting Items for Systematic Reviews and Meta-Analyses). Articles that included the descriptors “lichen” and “Antarctic” were gathered from the web, and a total of 110 and 614 publications were retrieved from PubMed and ScienceDirect, respectively. From those, 109 publications were selected and grouped according to their main research characteristics, namely, (i) biodiversity, ecology and conservation; (ii) biomonitoring and environmental health; (iii) biotechnology and metabolism; (iv) climate change; (v) evolution and taxonomy; (vi) reviews; and (vii) symbiosis. Several topics were related to the discovery of secondary metabolites with potential for treating neurodegenerative, cancer and metabolic diseases, besides compounds with antimicrobial activity. Survival mechanisms under extreme environmental conditions were also addressed in many studies, as well as research that explored the lichen-associated microbiome, its biodiversity, and its use in biomonitoring and climate change, and reviews. The main findings of these studies are discussed, as well as common themes and perspectives.

12 June 2025 in Research Square
Verified
Preprint
Open access
PDF file
MOMaria Ogrzewalska
Maria Ogrzewalska
RVRalph Thijl Vanstreels
Ralph Thijl Vanstreels
EPElisa Pereira
Elisa Pereira
ECEmandi Campinas
Emandi Campinas
LJLeonard Correa Junior
Leonard Correa Junior
PRPaola Resende
Paola Resende
The spread of high pathogenicity avian influenza virus (HPAIV) H5N1 clade 2.3.4.4b into Antarctica represents a major threat to polar wildlife. Here we report on the detection and genomic analysis of HPAIV H5N1 in a kelp gull ( Larus domincanus ), a pintado petrel ( Daption capense ), and an Antarctic fur seal ( Arctocephalus gazella ) during the 2023/2024 and 2024/2025 austral summers in the South Shetland Islands, Antarctica. Whole-genome sequencing and phylogenetic analysis revealed that the viruses from each of these three hosts descended from a different introduction event. The gull and fur seal strains clustered with viruses that had been previously detected predominantly in marine mammals in South America, while the petrel strain clustered with viruses detected in seabirds and marine mammals in the Subantarctic island of South Georgia. These findings reveal there is extensive epidemiological connectivity between South America and Antarctica, with South Georgia also serving as a “stepping stone” for virus spread in the region. The dissemination of HPAIV H5N1 in Antarctic wildlife highlights the urgent need for enhanced surveillance, strict biosafety protocols, and a One Health approach to prevent further spread and ecological disruption in one of the planet’s most vulnerable environments.

29 December 2024 in bioRxiv
Verified
Preprint
Open access
PDF file
MOMaria Ogrzewalska
Maria Ogrzewalska
EPElisa Cavalcante Pereira
Elisa Cavalcante Pereira
RVRalph Eric Thijl Vanstreels
Ralph Eric Thijl Vanstreels
ECEmandi Campista
Emandi Campista
LCLeonardo Corrêa
Leonardo Corrêa
PRPaola Resende
Paola Resende
Whole-genome analysis of the earliest-detected High Pathogenicity Avian Influenza Virus (HPAIV) H5N1 clade 2.3.4.4b detected in Hannah Point, Antarctica (January 2024) reveals close relatedness to strains that circulated in pinnipeds and seabirds along the Atlantic coast of South America during the second half of 2023.