Although microorganisms play crucial roles in ecosystems, metagenomic analyses of soil samples are quite scarce, especially in the Southern Hemisphere. In this work, the microbial diversity of soil samples from an Atlantic Forest and Caatinga was analyzed using a metagenomic approach. Proteobacteria and Actinobacteria were the dominant phyla in both samples. Among which, a significant proportion of stress‐resistant bacteria associated to organic matter degradation was found. Sequences related to metabolism of amino acids, nitrogen, and DNA and stress resistance were more frequent in Caatinga soil, while the forest sample showed the highest occurrence of hits annotated in phosphorous metabolism, defense mechanisms, and aromatic compound degradation subsystems. The principal component analysis (PCA) showed that our samples are close to the desert metagenomes in relation to taxonomy, but are more similar to rhizosphere microbiota in relation to the functional profiles. The data indicate that soil characteristics affect the taxonomic and functional distribution; these characteristics include low nutrient content, high drainage (both are sandy soils), vegetation, and exposure to stress. In both samples, a rapid turnover of organic matter with low greenhouse gas emission was suggested by the functional profiles obtained, reinforcing the importance of preserving natural areas.

The current resurgence of hydropower expansion toward tropical areas has been largely based on run-of-the-river (ROR) dams, which are claimed to have lower environmental impacts due to their smaller reservoirs. The Belo Monte dam was built in Eastern Amazonia and holds the largest installed capacity among ROR power plants worldwide. Here, we show that postdamming greenhouse gas (GHG) emissions in the Belo Monte area are up to three times higher than preimpoundment fluxes and equivalent to about 15 to 55 kg CO₂eq MWh⁻¹. Since per-area emissions in Amazonian reservoirs are significantly higher than global averages, reducing flooded areas and prioritizing the power density of hydropower plants seem to effectively reduce their carbon footprints. Nevertheless, total GHG emissions are substantial even from this leading-edge ROR power plant. This argues in favor of avoiding hydropower expansion in Amazonia regardless of the reservoir type.

The Xingu and Tapajós rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in sediments (suspended, riverbed, and downcore) of the Xingu and Tapajós rias to investigate the effects of hydrologic variations on the carbon budget in these clearwater rivers over the Holocene. Ages of sediment deposition (~100 to 5,500 years) were constrained by optically stimulated luminescence and radiocarbon. Major elements geochemistry and concentration of total organic carbon (TOC) indicate that seasonal hydrologic variations exert a strong influence on riverine productivity and on the input and preservation of organic matter in sediments. Stable carbon isotope data (δ13C from -31.04 to -27.49‰) and pollen analysis indicate that most of the carbon buried in rias is derived from forests. In the Xingu River, diatom analysis in bottom sediments revealed 65 infrageneric taxa that are mostly well-adapted to slack oligotrophic and acidic waters. TOC values in sediment cores are similar to values measured in riverbed sediments and indicate suitable conditions for organic matter preservation in sediments of the Xingu and Tapajós rias at least since the mid-Holocene, with carbon burial rates varying from about 84 g m-2 yr-1 to 169 g m-2 yr-1. However, redox-sensitive elements in sediment core indicate alternation between anoxic/dysoxic and oxic conditions in the water-sediment interface that may be linked to abrupt changes in precipitation. The variation between anoxic/dysoxic and oxic conditions in the water-sediment interface controls organic matter mineralization and methanogenesis. Thus, such changes promoted by hydrological variations significantly affect the capacity of Amazon rias to act either as sources or sinks of carbon.