Fangyi Chen

Fangyi Chen


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
22 May 2011 in Nature Neuroscience
Verified
Journal Article
Open access
PDF file
FCFangyi Chen
Fangyi Chen
DZDingjun Zha
Dingjun Zha
AFAnders Fridberger
Anders Fridberger
JZJiefu Zheng
Jiefu Zheng
NCNiloy Choudhury
Niloy Choudhury
ANAlfred L Nuttall
Alfred L Nuttall
The mammalian cochlea can detect near-threshold sound signals by mechanically amplifying sub-nanometer vibrations of the basilar membrane. This study describes vibration enhancement in the hearing organ opposite the basilar membrane, at the reticular lamina. The ear is a remarkably sensitive pressure fluctuation detector. In guinea pigs, behavioral measurements indicate a minimum detectable sound pressure of ∼20 μPa at 16 kHz. Such faint sounds produce 0.1-nm basilar membrane displacements, a distance smaller than conformational transitions in ion channels. It seems that noise within the auditory system would swamp such tiny motions, making weak sounds imperceptible. Here we propose a new mechanism contributing to a resolution of this problem and validate it through direct measurement. We hypothesized that vibration at the apical side of hair cells is enhanced compared with that at the commonly measured basilar membrane side. Using in vivo optical coherence tomography, we demonstrated that apical-side vibrations peaked at a higher frequency, had different timing and were enhanced compared with those at the basilar membrane. These effects depend nonlinearly on the stimulus sound pressure level. The timing difference and enhancement of vibrations are important for explaining how the noise problem is circumvented.

3 September 2010 in BMC Neuroscience
Verified
Journal Article
Open access
PDF file
WMWeike Mo
Weike Mo
FCFangyi Chen
Fangyi Chen
ANAlex Nechiporuk
Alex Nechiporuk
TNTeresa Nicolson
Teresa Nicolson
Background: Vestibular reflexes coordinate movements or sensory input with changes in body or head position. Vestibular-evoked responses that involve the extraocular muscles include the vestibulo-ocular reflex (VOR), a compensatory eye movement to stabilize retinal images. Although an angular VOR attributable to semicircular canal stimulation was reported to be absent in free-swimming zebrafish larvae, recent studies reveal that vestibular-induced eye movements can be evoked in zebrafish larvae by both static tilts and dynamic rotations that tilt the head with respect to gravity. Results: We have determined herein the basis of sensitivity of the larval eye movements with respect to vestibular stimulus, developmental stage, and sensory receptors of the inner ear. For our experiments, video recordings of larvae rotated sinusoidally at 0.25 Hz were analyzed to quantitate eye movements under infrared illumination. We observed a robust response that appeared as early as 72 hours post fertilization (hpf), which increased in amplitude over time. Unlike rotation about an earth horizontal axis, rotation about an earth vertical axis at 0.25 Hz did not evoke eye movements. Moreover, vestibular-induced responses were absent in mutant cdh23 larvae and larvae lacking anterior otoliths. Conclusions: Our results provide evidence for a functional vestibulo-oculomotor circuit in 72 hpf zebrafish larvae that relies upon sensory input from anterior/utricular otolith organs.

26 April 2017 in Frontiers in Molecular Neuroscience
Verified
Journal Article
Open access
CCCheng Cheng
Cheng Cheng
LGLuo Guo
Luo Guo
LLLing Lu
Ling Lu
XXXiaochen Xu
Xiaochen Xu
SZShaSha Zhang
ShaSha Zhang
Renjie ChaiRenjie Chai
Renjie Chai
Cochlear supporting cells (SCs) have been shown to be a promising resource for hair cell (HC) regeneration in the neonatal mouse cochlea. Previous studies have reported that Lgr5+ SCs can regenerate HCs both in vitro and in vivo and thus are considered to be inner ear progenitor cells. Lgr5+ progenitors are able to regenerate more HCs than Lgr5− SCs, and it is important to understand the mechanism behind the proliferation and HC regeneration of these progenitors. Here, we isolated Lgr5+ progenitors and Lgr5− SCs from Lgr5-EGFP-CreERT2/Sox2-CreERT2/Rosa26-tdTomato mice via flow cytometry. As expected, we found that Lgr5+ progenitors had significantly higher proliferation and HC regeneration ability than Lgr5− SCs. Next, we performed RNA-Seq to determine the gene expression profiles of Lgr5+ progenitors and Lgr5− SCs. We analyzed the genes that were enriched and differentially expressed in Lgr5+ progenitors and Lgr5− SCs, and we found 8 cell cycle genes, 9 transcription factors, and 24 cell signaling pathway genes that were uniquely expressed in one population but not the other. Last, we made a protein-protein interaction network to further analyze the role of these differentially expressed genes. In conclusion, we present a set of genes that might regulate the proliferation and HC regeneration ability of Lgr5+ progenitors, and these might serve as potential new therapeutic targets for HC regeneration.

9 April 2012 in PLOS ONE
Verified
Journal Article
Open access
PDF file
DZDingjun Zha
Dingjun Zha
FCFangyi Chen
Fangyi Chen
SRSripriya Ramamoorthy
Sripriya Ramamoorthy
AFAnders Fridberger
Anders Fridberger
NCNiloy Choudhury
Niloy Choudhury
ANAlfred L. Nuttall
Alfred L. Nuttall
Mammalian hearing is refined by amplification of the sound-evoked vibration of the cochlear partition. This amplification is at least partly due to forces produced by protein motors residing in the cylindrical body of the outer hair cell. To transmit power to the cochlear partition, it is required that the outer hair cells dynamically change their length, in addition to generating force. These length changes, which have not previously been measured in vivo, must be correctly timed with the acoustic stimulus to produce amplification. Using in vivo optical coherence tomography, we demonstrate that outer hair cells in living guinea pigs have length changes with unexpected timing and magnitudes that depend on the stimulus level in the sensitive cochlea. The level-dependent length change is a necessary condition for directly validating that power is expended by the active process presumed to underlie normal hearing.

21 September 2018 in Human Genetics
Verified
Journal Article
Closed access
PDF file
SHShanshan Han
Shanshan Han
XLXiliang Liu
Xiliang Liu
SXShanglun Xie
Shanglun Xie
MGMeng Gao
Meng Gao
FLFei Liu
Fei Liu
MLMugen Liu
Mugen Liu

1 January 2006 in The Journal of the Acoustical Society of America
Verified
Journal Article
Closed access
PDF file
FCFangyi Chen
Fangyi Chen
HCHoward I. Cohen
Howard I. Cohen
TBThomas Bifano
Thomas Bifano
JCJason Castle
Jason Castle
JFJeffrey Fortin
Jeffrey Fortin
AHAllyn E. Hubbard
Allyn E. Hubbard
The construction, measurement, and modeling of an artificial cochlea (ACochlea) are presented in this paper. An artificial basilar membrane (ABM) was made by depositing discrete Cu beams on a piezomembrane substrate. Rather than two fluid channels, as in the mammalian cochlea, a single fluid channel was implemented on one side of the ABM, facilitating the use of a laser to detect the ABM vibration on the other side. Measurements were performed on both the ABM and the ACochlea. The measurement results on the ABM show that the longitudinal coupling on the ABM is very strong. Reduced longitudinal coupling was achieved by cutting the membrane between adjacent beams using a laser. The measured results from the ACochlea with a laser-cut ABM demonstrate cochlear-like features, including traveling waves, sharp high-frequency rolloffs, and place-specific frequency selectivity. Companion computational models of the mechanical devices were formulated and implemented using a circuit simulator. Experimental data were compared with simulation results. The simulation results from the computational models of the ABM and the ACochlea are similar to their experimental counterparts.