The present study was conducted to determine the changes which occurred in the water-stressed fenugreek (Trigonella foenum-gracum L.) in response to melatonin treatment. Fenugreek is a valuable medicinal plant which contains trigonelline as its major alkaloid that plays an osmoregulatory role in abiotic stress. To this end, two experiments were performed. First, the effects of three levels of water deficit were investigated on the physiological and biochemical responses using the PEG 6000. These levels included the NSC (watered with the nutrient solution only), SS (-3 Bar water potential), MS (-5 Bar water potential), and HS (-7 Bar water potential). Then, four concentrations of melatonin were used after selecting the appropriate level for the drought stress (-7 Bar water potential). These levels encompassed the NSC, NTS (19.5% PEG solution only), M50 (50 µM melatonin +19.5% PEG), M100 (100 µM melatonin +19.5% PEG), M300 (300 µM melatonin +19.5% PEG), and M500 (500 µM of melatonin +19.5% PEG). The findings of the first experiment demonstrated that water deficit decreased the weight and length of fenugreek shoots as well as chlorophyll a, chlorophyll b, and carotenoid contents, and catalase activity. In addition, such a deficit led to an increase in proline and trigonelline as osmoregulator and enhanced the activity of other antioxidant enzymes, namely superoxide dismutase (SOD), peroxidase (POD), polyphenol oxidase (PPO), and ascorbate peroxidase (APX). Further, water deficit enhanced endogenous melatonin concentration. Finally, the hydrogen peroxide and malondialdehyde concentrations as well as Reactive Oxygen Species (ROS) also increased under severe stress. The results of the second experiment indicated that melatonin treatment significantly reduced chlorophyll degradation. Furthermore, the activities of the ROS scavenging enzymes such as the SOD, POD, and CAT were increased by melatonin. Moreover, exogenous melatonin led to an increase in endogenous melatonin and trigonelline. These results revealed that fenugreek tolerated water deficit by increasing the endogenous melatonin and trigonelline, as well as the general physiological responses. Additionally, treating the stressed plant with melatonin enhanced the endogenous concentration of the melatonin and trigonelline whereas it led to a decrease in proline content.