Dmitry Polyakov

Dr. Dmitry Polyakov

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2018 in Carbohydrate Polymers
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Journal Article
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Sergei RaikSergei Raik
Sergei Raik
DPDaria N. Poshina
Daria N. Poshina
TLTatiana A. Lyalina
Tatiana A. Lyalina
DPDmitry Polyakov
Dmitry Polyakov
VVVadim B. Vasilyev
Vadim B. Vasilyev
Yury A. SkorikYury A. Skorik
Yury A. Skorik

Verified
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Anna Igorevna SulatskayaAnna Igorevna Sulatskaya
Anna Igorevna Sulatskaya
NRNatalia P. Rodina
Natalia P. Rodina
DPDmitry Polyakov
Dmitry Polyakov
MSMaksim I. Sulatsky
Maksim I. Sulatsky
TATatyana O. Artamonova
Tatyana O. Artamonova
KTKonstantin K. Turoverov
Konstantin K. Turoverov
The persistence of high concentrations of beta-2-microglobulin (β2M) in the blood of patients with acute renal failure leads to the development of the dialysis-related amyloidosis. This disease manifests in the deposition of amyloid fibrils formed from the various forms of β2M in the tissues and biological fluids of patients. In this paper, the amyloid fibrils formed from the full-length β2M (β2m) and its variants that lack the 6 and 10 N-terminal amino acids of the protein polypeptide chain (ΔN6β2m and ΔN10β2m, respectively) were probed by using the fluorescent dye thioflavin T (ThT). For this aim, the tested solutions were prepared via the equilibrium microdialysis approach. Spectroscopic analysis of the obtained samples allowed us to detect one binding mode (type) of ThT interaction with all the studied variants of β2M amyloid fibrils with affinity ~104 M−1. This interaction can be explained by the dye molecules incorporation into the grooves that were formed by the amino acids side chains of amyloid protofibrils along the long axis of the fibrils. The decrease in the affinity and stoichiometry of the dye interaction with β2M fibrils, as well as in the fluorescence quantum yield and lifetime of the bound dye upon the shortening of the protein amino acid sequence were shown. The observed differences in the ThT-β2M fibrils binding parameters and characteristics of the bound dye allowed to prove not only the difference of the ΔN10β2m fibrils from other β2M fibrils (that can be detected visually, for example, by transmission electron microscopy (TEM), but also the differences between β2m and ΔN6β2m fibrils (that can not be unequivocally confirmed by other approaches). These results prove an essential role of N-terminal amino acids of the protein in the formation of the β2M amyloid fibrils. Information about amyloidogenic protein sequences can be claimed in the development of ways to inhibit β2M fibrillogenesis for the treatment of dialysis-related amyloidosis.

1 July 2021 in Analytical Biochemistry
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Journal Article
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MAMariia Antipchik
Mariia Antipchik
EKEvgenia Korzhikova-Vlakh
Evgenia Korzhikova-Vlakh
DPDmitry Polyakov
Dmitry Polyakov
ITIrina Tarasenko
Irina Tarasenko
JRJekaterina Reut
Jekaterina Reut
VSVitali Syritski
Vitali Syritski

3 October 2011 in Preparative Biochemistry & Biotechnology
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Journal Article
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KSK. V. Solovyov
K. V. Solovyov
DPDmitry Polyakov
Dmitry Polyakov
NGN. A. Grudinina
N. A. Grudinina
Vladimir EgorovVladimir Egorov
Vladimir Egorov
IMI. V. Morozova
I. V. Morozova
MSM. M. Shavlovsky
M. M. Shavlovsky
The possibility of obtaining recombinant fibrillogenic fusion proteins such as transthyretin (TTR) and β2-microglobulin (β2M) with a superfolder green fluorescent protein (sfGFP) was studied. According to the literature data, sfGFP is resistant to denaturating influences, does not aggregate during renaturation, possesses improved kinetic characteristics of folding, and folds well when fused to different polypeptides. The corresponding DNA constructs for expression in Escherichia coli were created. It could be shown that during expression of these constructs in E. coli, soluble forms of the fusion proteins are synthesized. Efficient isolation of the fusion proteins was performed with the help of nickel-affinity chromatography. For this purpose a polyhistidine sequence (6-His-tag) was incorporated into the C-terminus of the sfGFP. We could show that the purified fusion proteins contained full-size sequences of the most amyloidogenic TTR variant, TTR(L55P) and β2M, and also sfGFP possessing fluorescent properties. In the course of fibrillogenesis both fusion proteins demonstrated their ability to form fibrils that were clearly detectable by atomic force microscopy. Furthermore, with the help of confocal microscopy we were able to reveal structures (exhibiting fluorescence) that are formed during fibrillogenesis. Thus, the use of sfGFP has made it possible to avoid formation of inclusion bodies (IB) during the synthesis of recombinant fusion proteins and to obtain soluble forms of TTR(L55P) and β2M that are suitable for further studies.

1 November 2016 in Cell and Tissue Biology
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OAO. I. Antimonova
O. I. Antimonova
NGN. A. Grudinina
N. A. Grudinina
VEV. V. Egorov
V. V. Egorov
DPDmitry Polyakov
Dmitry Polyakov
VIV. V. Il’IN
V. V. Il’IN
MSM. M. Shavlovskii
M. M. Shavlovskii

21 December 2018 in Pharmaceutics
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Leonid ChurilovLeonid Churilov
Leonid Churilov
Viktor Korzhikov-VlakhViktor Korzhikov-Vlakh
Viktor Korzhikov-Vlakh
ESEkaterina Sinitsyna
Ekaterina Sinitsyna
DPDmitry Polyakov
Dmitry Polyakov
ODOleg Darashkevich
Oleg Darashkevich
Tatiana TennikovaTatiana Tennikova
Tatiana Tennikova
The compound 4-thioureidoiminomethylpyridinium perchlorate (perchlozone©) is a novel anti-tuberculosis drug that is active in multiple drug resistance cases, but the compound is hepatotoxic. To decrease the systemic load and to achieve targeting, we encapsulated the drug into poly(lactic acid)-based micro- (1100 nm) and nanoparticles (170 nm) that were modified with single-chain camel immunoglobulin G (IgG) for targeting. Both micro- and nanoparticles formed stable suspensions in saline solution at particle concentrations of 10–50 mg/mL. The formulations were injected intraperitoneally and intravenously into the mice with experimental tuberculosis. The survival of control animals was compared to that of mice which were treated with daily oral drug solution, single intraperitoneal administration of drug-loaded particles, and those treated both intravenously and intraperitoneally by drug-loaded particles modified with polyclonal camel IgGs. The distribution of particles in the organs of mice was analyzed with immunofluorescence and liquid chromatography/mass spectrometry. Morphological changes related to tuberculosis and drug toxicity were registered. Phagocytic macrophages internalized particles and transported them to the foci of tuberculosis in inner organs. Nanoparticle-based drug formulations, especially those with IgG, resulted in better survival and lower degree of lung manifestations than the other modes of treatment.