Fruit peels of certain pepper (Capsicum annum L.) varieties accumulate a large amount of anthocyanins and exhibit purple color under medium-wave ultraviolet (UV-B) conditions, which severely impacts the commodity value of peppers. However, the regulatory mechanism of the above process has not been well studied so far. To explore which key genes are involved in this regulatory mechanism, pepper variety 19Q6100, the fruit peels of which turn purple under UV-B conditions, was investigated in this study. Transcription factors with expression levels significantly impacted by UV-B were identified by RNA-seq. Those genes may be involved in the regulation of UV-B-induced anthocyanin biosynthesis. Yeast one-hybrid results revealed that seven transcription factors, CabHLH143, CaMYB113, CabHLH137, CaMYBG, CaWRKY41, CaWRKY44 and CaWRKY53 directly bound to the putative promotor regions of the structural genes in the anthocyanin biosynthesis pathway. CaMYB113 was found to interact with CabHLH143 and CaHY5 by yeast two-hybrid assay, and those three genes may participate collaboratively in UV-B-induced anthocyanin biosynthesis in pepper fruit. Virus-induced gene silencing (VIGS) indicated that fruit peels of CaMYB113-silenced plants were unable to turn purple under UV-B conditions. These findings could deepen our understanding of UV-B-induced anthocyanin biosynthesis in pepper.

Plant architecture is a major motif of plant diversity, and shoot branching patterns primarily determine the aerial architecture of plants. In this study, we identified an inbred pepper line with fewer lateral branches, 20C1734, which was free of lateral branches at the middle and upper nodes of the main stem with smooth and flat leaf axils. Successive leaf axil sections confirmed that in normal pepper plants, for either node n, P_n (Primordium n) < 1 cm and P_n+1 < 1 cm were the critical periods between the identification of axillary meristems and the establishment of the region, whereas P_n+3 < 1 cm was fully developed and formed a completely new organ. In 20C1734, the normal axillary meristematic tissue region establishment and meristematic cell identity confirmation could not be performed on the axils without axillary buds. Comparative transcriptome analysis revealed that “auxin-activated signaling pathway”, “response to auxin”, “response to abscisic acid”, “auxin biosynthetic process”, and the biosynthesis of the terms/pathways, such as “secondary metabolites”, were differentially enriched in different types of leaf axils at critical periods of axillary meristem development. The accuracy of RNA-seq was verified using RT-PCR for some genes in the pathway. Several differentially expressed genes (DEGs) related to endogenous phytohormones were targeted, including several genes of the PINs family. The endogenous hormone assay showed extremely high levels of IAA and ABA in leaf axils without axillary buds. ABA content in particular was unusually high. At the same time, there is no regular change in IAA level in this type of leaf axils (normal leaf axils will be accompanied by AM formation and IAA content will be low). Based on this, we speculated that the contents of endogenous hormones IAA and ABA in 20C1734 plant increased sharply, which led to the abnormal expression of genes in related pathways, which affected the formation of Ams in leaf axils in the middle and late vegetative growth period, and finally, nodes without axillary buds and side branches appeared.

Cotyledon color can serve as a convenient and efficient morphological marker in F₁ hybrid seeds screening, however, few studies on mutants affecting the color of cotyledon have been reported. A genetic population was generated by crossing 21C1344 with purple cotyledon and 21C912 with green cotyledon and the localization of CaMYB113 on chromosome 10 was determined. The results of virus-induced gene silencing (VIGS) demonstrated a substantial decrease in anthocyanin accumulation in cotyledons upon silencing of CaMYB113. The overexpression of the CaMYB113 gene not only resulted in purple pigmentation in both callus and leaves, but also changed the expression levels of downstream genes involved in anthocyanin synthesis. CaMYB113 could bind to crucial genes related to anthocyanin biosynthesis demonstrated by the yeast one-hybrid assay, thereby regulating anthocyanin production and accumulation in capsicum cotyledons. The gene we identified could be converted into a reliable selection marker for achieving stable genetic transformation, while also providing valuable insights for maintaining purity in pepper hybrid seeds.

Light and drought antagonistically regulate stomatal movement, yet the mechanisms for integrating these conflicting signals remain unclear. In this study, the stomatal aperture and photosynthetic parameters under red light (RL), blue light (BL), and white light in different water regimes were evaluated. Transcriptome analysis was conducted during a 0–6 h period of BL exposure, with or without drought, to explore the molecular mechanisms underlying BL and drought-mediated stomatal movement. Under non-drought conditions, BL significantly enhanced stomatal conductance, transpiration rate, and stomatal aperture. After drought stress, BL-treated seedlings exhibited the greatest reductions in these indicators. Transcriptomic analysis revealed that both BL-responsive genes and drought-responsive genes were significantly enriched in overlapping pathways related to plant hormone signal transduction, and biological processes of water/fluid transport. Among these, the aquaporin gene CsPIP2;3 was identified as a core node in the crosstalk between BL and drought signals, and a potential key regulator of stomatal movement. Tissue-specific expression analysis showed its highest expression in mature leaves; GUS staining further confirmed its expression in guard cells and vascular bundles, while subcellular localization verified the plasma membrane localization of its encoded protein. The transcriptomic data provide novel insights into the mechanisms underlying stomatal movement regulated by BL and drought.