Marta Dudek (Ziemianek)

Dr. Marta Dudek (Ziemianek)

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
6 November 2020 in RSC Advances
Verified
Journal Article
Open access
PDF file
M(Marta Dudek (Ziemianek)
Marta Dudek (Ziemianek)
NTNina Tarnowicz-Staniak
Nina Tarnowicz-Staniak
MDMarco Deiana
Marco Deiana
ZPZiemowit Pokładek
Ziemowit Pokładek
Marek SamocMarek Samoc
Marek Samoc
KMKatarzyna Matczyszyn
Katarzyna Matczyszyn
The process of two-photon-induced isomerization occurring in various organic molecules, among which azobenzene derivatives hold a prominent position, offers a wide range of functionalities, which can be used in both material and life sciences. This review provides a comprehensive description of nonlinear optical (NLO) properties of azobenzene (AB) derivatives whose geometries can be switched through two-photon absorption (TPA). Employing the nonlinear excitation process allows for deeper penetration of light into the tissues and provides opportunities to regulate biological systems in a non-invasive manner. At the same time, the tight focus of the beam needed to induce nonlinear absorption helps to improve the spatial resolution of the photoinduced structures. Since near-infrared (NIR) wavelengths are employed, the lower photon energies compared to usual one-photon excitation (typically, the azobenzene geometry change from trans to cis form requires the use of UV photons) cause less damage to the biological samples. Herein, we present an overview of the strategies for optimizing azobenzene-based photoswitches for efficient two-photon excitation (TPE) and the potential applications of two-photon-induced isomerization of azobenzenes in biological systems: control of ion flow in ion channels or control of drug release, as well as in materials science, to fabricate data storage media, optical filters, diffraction elements etc., based on phenomena like photoinduced anisotropy, mass transport and phase transition. The extant challenges in the field of two-photon switchable azomolecules are discussed.

6 November 2024 in Angewandte Chemie International Edition
Verified
Journal Article
Open access
M(Marta Dudek (Ziemianek)
Marta Dudek (Ziemianek)
LLLucía López‐Pacios
Lucía López‐Pacios
NSNasim Sabouri
Nasim Sabouri
JJuan José Nogueira
Juan José Nogueira
LMLara Martinez-Fernandez
Lara Martinez-Fernandez
MDMarco Deiana
Marco Deiana
G‐quadruplex (G4) DNA structures are increasingly acknowledged as promising targets in cancer research, and the development of G4‐specific stabilizing compounds may lay a fundamental foundation in precision medicine for cancer treatment. Here, we propose a light‐responsive G4‐binder for precise modulation of drug activation, providing dynamic and spatiotemporal control over G4‐associated biological processes contributing to cancer cell death. We developed a specialized fluorinated azobenzene (AB) switch equipped with a quinoline unit and a positively charged carboxamide side chain, Q‐Azo4F‐C, designed for targeted binding to G4 structures within cells. Biophysical studies, combined with molecular dynamics simulations, provide insights into the unique coordination modes of the photoswitchable ligand in its trans and cis configurations when interacting with G4s. The observed variations in complexation processes between the two isomeric states in different cancer cell lines manifest in more than 25‐fold reversible cytotoxic activity. Immunostaining conducted with the structure‐specific G4 antibody (BG4), establishes a direct correlation between cytotoxicity and the varying extent of G4 induction regulated by the two isoforms. Finally, we demonstrate the photo‐driven reversible regulation of G4 structures in lung cancer cells by Q‐Azo4F‐C. Our findings highlight the potential of light‐responsive G4‐binders in advancing precision cancer therapy through dynamic control of G4‐mediated pathways.

7 July 2021 in Nanoscale
Verified
Journal Article
Open access
PDF file
MDMarco Deiana
Marco Deiana
MMMaëlle Mosser
Maëlle Mosser
TBTangui Le Bahers
Tangui Le Bahers
Elise DumontElise Dumont
Elise Dumont
M(Marta Dudek (Ziemianek)
Marta Dudek (Ziemianek)
LGLaure Guy
Laure Guy
Light-activated functional materials capable of remote control over duplex and G-quadruplex (G4) nucleic acids formation at the cellular level are still very rare. Herein, we report on the photoinduced macrocyclisation of a helicenoid quinoline derivative of binaphthol that selectively provides easy access to an unprecedented class of extended heteroaromatic structures with remarkable photophysical and DNA/RNA binding properties. Thus, while the native bisquinoline precursor shows no DNA binding activity, the new in situ photochemically generated probe features high association constants to DNA and RNA G4s. The latter inhibits DNA synthesis by selectively stabilizing G4 structures associated with oncogenic promoters and telomere repeat units. Finally, the light sensitive compound is capable of in cellulo photoconversion, localizes primarily in the G4-rich sites of cancer cells, competes with a well-known G4 binder and shows a clear nuclear co-localization with the quadruplex specific antibody BG4. This work provides a benchmark for the future design and development of a brand-new generation of light-activated target-selective G4-binders.

1 September 2020 in Dyes and Pigments
Verified
Journal Article
Closed access
M(Marta Dudek (Ziemianek)
Marta Dudek (Ziemianek)
ZPZiemowit Pokładek
Ziemowit Pokładek
MDMarco Deiana
Marco Deiana
KMKatarzyna Matczyszyn
Katarzyna Matczyszyn

4 July 2024 in Nanoscale Horizons
Verified
Journal Article
Open access
PDF file
KSKarolina Saczuk
Karolina Saczuk
M(Marta Dudek (Ziemianek)
Marta Dudek (Ziemianek)
KMKatarzyna Matczyszyn
Katarzyna Matczyszyn
MDMarco Deiana
Marco Deiana
The majority of self-assembled fluorescent dyes suffer from aggregation-caused quenching (ACQ), which detrimentally affects their diagnostic and therapeutic effectiveness. While aggregation-induced emission (AIE) active dyes offer a promising solution to overcome this limitation, they may face significant challenges as the intracellular environment often prevents aggregation, leading to disassembly and posing challenges for AIE fluorogens. Recent progress in signal amplification through the disassembly of ACQ dyes has opened new avenues for creating ultrasensitive optical sensors and enhancing phototherapeutic outcomes. These advances are well-aligned with cutting-edge technologies such as single-molecule microscopy and targeted molecular therapies. This work explores the concept of disaggregation-induced emission (DIE), showcasing the revolutionary capabilities of DIE-based dyes from their design to their application in sensing, bioimaging, disease monitoring, and treatment in both cellular and animal models. Our objective is to provide an in-depth comparison of aggregation versus disaggregation mechanisms, aiming to stimulate further advancements in the design and utilization of ACQ fluorescent dyes through DIE technology. This initiative is poised to catalyze scientific progress across a broad spectrum of disciplines.

24 February 2025 in The Journal of Physical Chemistry Letters
Verified
Journal Article
Open access
KSKarolina Saczuk
Karolina Saczuk
AKAhmad Kassem
Ahmad Kassem
M(Marta Dudek (Ziemianek)
Marta Dudek (Ziemianek)
DSDarío Puchán Sánchez
Darío Puchán Sánchez
LKLhoussain Khrouz
Lhoussain Khrouz
MDMarco Deiana
Marco Deiana
Modern photodynamic therapy (PDT) demands next-generation photosensitizers (PSs) that overcome heavy-atom dependency and enhance efficacy beyond traditional, highly oxygen-dependent type II mechanisms. We introduce herein TCI-NH, as a thiochromenocarbazole imide derivative designed for type I photodynamic action. Upon light activation, TCI-NH efficiently favors superoxide (O2•-) and PS-centered radical formation instead of singlet oxygen (1O2) generation. Its high luminescence efficiency and selective localization in both the endoplasmic reticulum and mitochondria enable precise, image-guided PDT. Notably, interactions with biomolecules, such as serum albumin or DNA, enhance TCI-NH's emission by up to 40-fold and amplify radical generation by up to 5-fold. With negligible dark toxicity, this results in ∼120 nM photocytotoxicity along with an impressive phototherapeutic index exceeding 200. Real-time live-cell imaging revealed rapid, light-triggered cytotoxicity characterized by apoptotic body formation and extensive cellular damage. With its small size, heavy-atom-free structure, exceptional, organelle specificity, and therapeutic efficacy, TCI-NH sets a new benchmark for anticancer type I PDT.