Bedia Cakmakoglu

Prof. Dr. Bedia Cakmakoglu

orcid

Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 April 2015 in Cellular Oncology
Verified
Journal Article
Open access
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ZCZeynep Birsu Cincin
Zeynep Birsu Cincin
MUMiray Unlu
Miray Unlu
BKBayram Kiran
Bayram Kiran
SBSinem Bireller
Sinem Bireller
YBYusuf Baran
Yusuf Baran
BCBedia Cakmakoglu
Bedia Cakmakoglu
Hesperidin, a glycoside flavonoid, is thought to act as an anti-cancer agent, since it has been found to exhibit both pro-apoptotic and anti-proliferative effects in several cancer cell types. The mechanisms underlying hesperidin-induced growth arrest and apoptosis are, however, not well understood. Here, we aimed to investigate the anti-proliferative and apoptotic effects of hesperidin on non-small cell lung cancer (NSCLC) cells and to investigate the mechanisms involved. The anti-proliferative and apoptotic effects of hesperidin on two NSCLC-derived cell lines, A549 and NCI-H358, were determined using a WST-1 colorimetric assay, a LDH cytotoxicity assay, a Cell Death Detection assay, an AnnexinV-FITC assay, a caspase-3 assay and a JC-1 assay, respectively, all in a time- and dose-dependent manner. As a control, non-cancerous MRC-5 lung fibroblasts were included. Changes in whole genome gene expression profiles were assessed using an Illumina Human HT-12v4 beadchip microarray platform, and subsequent data analyses were performed using an Illumina Genome Studio and Ingenuity Pathway Analyser (IPA). We found that after hesperidin treatment, A549 and NCI-H358 cells exhibited decreasing cell proliferation and increasing caspase-3 and other apoptosis-related activities, in conjunction with decreasing mitochondrial membrane potential activities, in a dose- and time-dependent manner. Through a GO analysis, by which changes in gene expression profiles were compared, we found that the FGF and NF-κB signal transduction pathways were most significantly affected in the hesperidin treated NCI-H358 and A549 NSCLC cells. Our results indicate that hesperidin elicits an in vitro growth inhibitory effect on NSCLC cells by modulating immune response-related pathways that affect apoptosis. When confirmed in vivo, hesperidin may serve as a novel anti-proliferative agent for non-small cell lung cancer.

12 May 2011 in Current Medical Research and Opinion
Verified
Journal Article
Closed access
ECEmel Canbay
Emel Canbay
BCBedia Cakmakoglu
Bedia Cakmakoglu
UZUmit Zeybek
Umit Zeybek
SSSeyma Sozen
Seyma Sozen
CCCanan Cacina
Canan Cacina
DBDursun Bugra
Dursun Bugra
(2011). Association of APE1 and hOGG1 polymorphisms with colorectal cancer risk in a Turkish population. Current Medical Research and Opinion: Vol. 27, No. 7, pp. 1295-1302. doi: 10.1185/03007995.2011.573544

1 August 2014 in Archives of Medical Research
Verified
Journal Article
Open access
ZCZeynep Birsu Cincin
Zeynep Birsu Cincin
MUMiray Unlu
Miray Unlu
BKBayram Kiran
Bayram Kiran
SBSinem Bireller
Sinem Bireller
YBYusuf Baran
Yusuf Baran
BCBedia Cakmakoglu
Bedia Cakmakoglu
Quercitrin (QR; quercetin-3-O-rhamnoside) has been used previously as an antibacterial agent and has been shown to inhibit the oxidation of low-density lipoproteins and prevent an allergic reaction. Furthermore, it was demonstrated that quercitrin exerts protective effects against H2O2-induced dysfunction in lung fibroblast cells. However, the mechanisms of quercitrin effects on cancer cell proliferation and apoptosis is not well understood. The aim of this study is to investigate the cytotoxic and apoptotic effects of quercitrin and the molecular mechanisms of quercitrin-induced apoptosis in non-small cell lung cancer (NSCLC) cell lines. Time- and dose-dependent antiproliferative and apoptotic effects of quercitrin determined by WST-1 cell proliferation assay, lactate dehydrogenase (LDH) cytotoxicity assay, determination of nucleosome enrichment factor, changes in caspase-3 activity, loss of mitochondrial membrane potential (MMP) and also the localization of phosphatidylserine in the plasma membrane. Changes in whole genome gene expression levels were examined by Illumina Human HT-12v4 beadchip microarrays. There were significant increases in caspase-3 activity, loss of MMP, and increases in apoptotic cell population in response to quercitrin in A549 and NCI-H358 NSCLC cells in a time- and dose-dependent manner. Our results demonstrated that genes involved in leukocyte transendothelial migration, cell adhesion and phosphatidylinositol signaling system pathways were the most statistically significant pathways in NCI-H358 and A549 cells. These results revealed that quercitrin has antiproliferative and apoptotic effects on lung cancer cells by modulating the immune response. After confirming its anticarcinogenic effects in vivo, quercitrin could be a novel and strong anticancer agent against NSCLC.

1 July 2018 in Biomedicine & Pharmacotherapy
Verified
Journal Article
Closed access
ZCZ.B. Cincin
Z.B. Cincin
BKB. Kiran
B. Kiran
YBY. Baran
Y. Baran
BCBedia Cakmakoglu
Bedia Cakmakoglu

6 January 2012 in Genetic Testing and Molecular Biomarkers
Verified
Journal Article
Closed access
MGMehmet Gencer
Mehmet Gencer
SDSelcuk Dasdemir
Selcuk Dasdemir
BCBedia Cakmakoglu
Bedia Cakmakoglu
YCYilmaz Cetinkaya
Yilmaz Cetinkaya
FVFigen Varlibas
Figen Varlibas
MAMakbule Aydin
Makbule Aydin
Aims: There is a growing interest in the understanding of a possible role of DNA repair systems in ageing and neurodegenerative diseases after DNA damage is observed in the brain of individuals affected by neurodegenerative diseases. In the light of these findings, we investigated whether DNA repair gene polymorphisms ( XRCC1 Arg399Gln, XRCC3 Thr241Met XPD Lys751Gln, XPG Asp1104His, APE1 Asp148Glu, and HOGG1 Ser326Cys ) account for an increased risk of Parkinson's disease (PD). Methods: The present analyses are based on 60 case subjects with PD and 108 unrelated healthy controls. Genotyping of DNA repair gene polymorphisms were detected by polymerase chain reaction-restriction fragment length polymorphism. Results: We, for the first time, demonstrated the positive association of APE1, XRCC1, and XRCC3 DNA repair gene variants with PD risk. In our study, the frequencies of Glu/Glu genotype in APE1, Gln+ genotype of XRCC1, and Thr+ genotype of XRCC3 are higher in patients than in controls ( p =0.028, p =0.002 and p =0.046, respectively). Conclusions: In conclusion, our findings have suggested that APE1, XRCC1, and XRCC3 genetic variants may be a risk factor by increasing oxidative stress that might cause the loss of dopaminergic cells in the substantiata nigra and locus caeruleus, leading to abnormal signal transmittion, and ultimately, the development of PD. In addition, generation of reactive oxygen species from dopamine might affect the other DNA repair pathway proteins that we did not examine in the current study. Further studies with larger sample groups are necessary to clarify the role of DNA repair genes and the development of PD.

6 August 2014 in Pathology and Oncology Research
Verified
Journal Article
Open access
PDF file
ZCZeynep Birsu Cincin
Zeynep Birsu Cincin
MUMiray Unlu
Miray Unlu
BKBayram Kiran
Bayram Kiran
SBSinem Bireller
Sinem Bireller
YBYusuf Baran
Yusuf Baran
BCBedia Cakmakoglu
Bedia Cakmakoglu
Quercetin, which is the most abundant bioflavonoid compound, is mainly present in the glycoside form of quercitrin. Although different studies indicated that quercitrin is a potent antioxidant, the action of this compound is not well understood. In this study, we investigated whether quercitrin has apoptotic and antiproliferative effects in DLD-1 colon cancer cell lines. Time and dose dependent antiproliferative and apoptotic effects of quercitrin were subsequently determined by WST-1 cell proliferation assay, lactate dehydrogenase (LDH) cytotoxicity assay, detection of nucleosome enrichment factor, changes in caspase-3 activity, loss of mitochondrial membrane potential (MMP) and also the localization of phosphatidylserine (PS) in the plasma membrane. There were significant increases in caspase-3 activity, loss of MMP, and increases in the apoptotic cell population in response to quercitrin in DLD-1 colon cancer cells in a time- and dose-dependent manner. These results revealed that quercitrin has antiproliferative and apoptotic effects on colon cancer cells. Quercitrin activity supported with in vivo analyses could be a biomarker candicate for early colorectal carcinoma.