Samo Penič

Dr. Samo Penič

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 October 2019 in PLOS Biology
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BGBrian R Graziano
Brian R Graziano
JTJason P Town
Jason P Town
ESEwa Sitarska
Ewa Sitarska
TNTamas L Nagy
Tamas L Nagy
MFMiha Fošnarič
Miha Fošnarič
OWOrion D Weiner
Orion D Weiner
Migratory cells use distinct motility modes to navigate different microenvironments, but it is unclear whether these modes rely on the same core set of polarity components. To investigate this, we disrupted actin-related protein 2/3 (Arp2/3) and the WASP-family verprolin homologous protein (WAVE) complex, which assemble branched actin networks that are essential for neutrophil polarity and motility in standard adherent conditions. Surprisingly, confinement rescues polarity and movement of neutrophils lacking these components, revealing a processive bleb-based protrusion program that is mechanistically distinct from the branched actin-based protrusion program but shares some of the same core components and underlying molecular logic. We further find that the restriction of protrusion growth to one site does not always respond to membrane tension directly, as previously thought, but may rely on closely linked properties such as local membrane curvature. Our work reveals a hidden circuit for neutrophil polarity and indicates that cells have distinct molecular mechanisms for polarization that dominate in different microenvironments.

18 June 2019 in Soft Matter
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MFMiha Fošnarič
Miha Fošnarič
SPSamo Penič
Samo Penič
Ales IglicAles Iglic
Ales Iglic
VKVeronika Kralj-Iglič
Veronika Kralj-Iglič
MDMitja Drab
Mitja Drab
NGNir Gov
Nir Gov
Simulations show that active protrusive forces induced by curved membrane proteins enhance their aggregation and drive a transition to flat pancake-shaped vesicles. This transition resembles the sheet-like protrusions (lamellipodia) of cells.

Verified
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KTKaja Troha
Kaja Troha
Domen VozelDomen Vozel
Domen Vozel
MAMatevž Arko
Matevž Arko
AZApolonija Bedina Zavec
Apolonija Bedina Zavec
DDDrago Dolinar
Drago Dolinar
Veronika Kralj-IglicVeronika Kralj-Iglic
Veronika Kralj-Iglic
The preparation of autologous platelet and extracellular vesicle-rich plasma (PVRP) has been explored in many medical fields with the aim to benefit from its healing potential. In parallel, efforts are being invested to understand the function and dynamics of PVRP that is complex in its composition and interactions. Some clinical evidence reveals beneficial effects of PVRP, while some report that there were no effects. To optimize the preparation methods, functions and mechanisms of PVRP, its constituents should be better understood. With the intention to promote further studies of autologous therapeutic PVRP, we performed a review on some topics regarding PVRP composition, harvesting, assessment and preservation, and also on clinical experience following PVRP application in humans and animals. Besides the acknowledged actions of platelets, leukocytes and different molecules, we focus on extracellular vesicles that were found abundant in PVRP.

8 September 2020 in Frontiers in Physics
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SPSamo Penič
Samo Penič
LMLuka Mesarec
Luka Mesarec
MFMiha Fošnarič
Miha Fošnarič
Lucyna MrówczyńskaLucyna Mrówczyńska
Lucyna Mrówczyńska
HHHenry Hägerstrand
Henry Hägerstrand
AIAleš Iglič
Aleš Iglič
In this mini-review, a brief historical survey of the mechanisms which determine the shapes of liposomes and cells and the budding and fission of their membrane is presented. Special attention is given to the role of orientational ordering of membrane components in thin membrane necks which connect the membrane buds (daughter vesicles) to the parent membrane. It is indicated that topological anti-defects in membrane necks may induce the rupture of the neck and the fission of the membrane daughter vesicles.

Verified
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Luka MesarecLuka Mesarec
Luka Mesarec
MDMitja Drab
Mitja Drab
SPSamo Penič
Samo Penič
Veronika Kralj-IglicVeronika Kralj-Iglic
Veronika Kralj-Iglic
Ales IglicAles Iglic
Ales Iglic
Biological membranes are composed of isotropic and anisotropic curved nanodomains. Anisotropic membrane components, such as Bin/Amphiphysin/Rvs (BAR) superfamily protein domains, could trigger/facilitate the growth of membrane tubular protrusions, while isotropic curved nanodomains may induce undulated (necklace-like) membrane protrusions. We review the role of isotropic and anisotropic membrane nanodomains in stability of tubular and undulated membrane structures generated or stabilized by cyto- or membrane-skeleton. We also describe the theory of spontaneous self-assembly of isotropic curved membrane nanodomains and derive the critical concentration above which the spontaneous necklace-like membrane protrusion growth is favorable. We show that the actin cytoskeleton growth inside the vesicle or cell can change its equilibrium shape, induce higher degree of segregation of membrane nanodomains or even alter the average orientation angle of anisotropic nanodomains such as BAR domains. These effects may indicate whether the actin cytoskeleton role is only to stabilize membrane protrusions or to generate them by stretching the vesicle membrane. Furthermore, we demonstrate that by taking into account the in-plane orientational ordering of anisotropic membrane nanodomains, direct interactions between them and the extrinsic (deviatoric) curvature elasticity, it is possible to explain the experimentally observed stability of oblate (discocyte) shapes of red blood cells in a broad interval of cell reduced volume. Finally, we present results of numerical calculations and Monte-Carlo simulations which indicate that the active forces of membrane skeleton and cytoskeleton applied to plasma membrane may considerably influence cell shape and membrane budding.

20 April 2015 in Soft Matter
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Journal Article
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SPSamo Penič
Samo Penič
AIAleš Iglič
Aleš Iglič
IBIsak Bivas
Isak Bivas
MFMiha Fošnarič
Miha Fošnarič
The membrane bending stiffness of nearly spherical lipid vesicles can be deduced from the analysis of their thermal shape fluctuations. The theoretical basis of this analysis [Milner and Safran, Phys. Rev. A: At., Mol., Opt. Phys., 1987, 36, 4371–4379] uses the mean field approximation. In this work we apply Monte Carlo simulations and estimate the error in the determination of the bending stiffness due to the approximations applied in the theory. It is less than 10%. The method presented in this work can also be used to determine the changes of the bending stiffness of biological membranes due to their chemical and/or structural modifications.