Alexander Vladimirovich Chulkov

Mr. Alexander Vladimirovich Chulkov

orcid

Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 April 2024 in Biochemical and Biophysical Research Communications
Verified
Journal Article
Closed access
Mikhail DubininMikhail Dubinin
Mikhail Dubinin
ACAlexander Vladimirovich Chulkov
Alexander Vladimirovich Chulkov
AIAnastasia D. Igoshkina
Anastasia D. Igoshkina
ACAlena A. Cherepanova
Alena A. Cherepanova
NMNatalia V. Mikina
Natalia V. Mikina

Verified
Journal Article
Open access
PDF file
Maria TimchenkoMaria Timchenko
Maria Timchenko
Oxana GalzitskayaOxana Galzitskaya
Oxana Galzitskaya
ACAlexander Vladimirovich Chulkov
Alexander Vladimirovich Chulkov
ILIlya Viatcheslavovitch Likhachev
Ilya Viatcheslavovitch Likhachev
AGAnna V. Glyakina
Anna V. Glyakina
ABAlexander G Bobylev
Alexander G Bobylev
The central role of YB-1 in messenger ribonucleoprotein particle (mRNP) metabolism and stress-granule biology highlights the importance of defining the determinants of its self-assembly. YB-1 fibrillogenesis has been attributed primarily to the cold shock domain (CSD). Here, we show that the YB-1 fragment spanning residues 1–129 (AP–CSD) form amyloid fibrils under near-physiological ionic strength (0.12–0.15 M KCl). Fibrillization proceeds without a pronounced exponential growth phase and increases approximately linearly over 45–50 h. Far-UV circular dichroism (CD) and attenuated total reflection Fourier-transform infrared spectroscopy (ATR-FTIR) indicate no substantial change in overall secondary-structure content during aggregation. In parallel, 1H nuclear magnetic resonance (NMR) spectroscopy reveals the depletion of soluble species, and oriented fiber X-ray diffraction displays the hallmark cross-β reflections at approximately 4.7 Å and 10 Å. The prolonged formation time implies an activation barrier that is unlikely to require global refolding. Instead, it may reflect early association events such as dimerization or other local rearrangements required for primary nucleation, followed by consolidation into stable intermolecular contacts. Aggregation that preserves a largely native-like fold while establishing cross-β order may reduce recognition by cellular quality-control systems that preferentially target globally unfolded or strongly destabilized states. This provides a plausible framework for how YB-1 derived assemblies could persist under stress and during age-associated proteostasis decline.