Giant reed (Arundo donax) is widely distributed across the globe and is considered an important energy crop. This study presents the first comprehensive analysis of the chloroplast genome of giant reed, revealing detailed characteristics of this species’ chloroplast genome. The chloroplast genome has a total length of 137,153 bp, containing 84 protein-coding genes, 38 tRNA genes, and 8 rRNA genes, with a GC content of 39%. Functional analysis indicates that a total of 45 photosynthesis-related genes and 78 self-replication-related genes were identified, which may be closely associated with its adaptability and growth characteristics. Phylogenetic analysis confirmed that Arundo donax cv. Lvzhou No.1 belongs to the Arundionideae clade and occupies a distinct evolutionary position compared to other Arundo species. The findings of this study not only enhance our understanding of the giant reed genome but also provide valuable genetic resources for its application in biotechnology, bioenergy crop development, and ecological restoration.

Pearl millet is a major cereal crop that feeds more than 90 million people worldwide in arid and semi-arid regions. The stalk phenotypes of Poaceous grasses are critical for their productivity and stress tolerance; however, the molecular mechanisms governing stalk development in pearl millet remain to be deciphered. In this study, we spatiotemporally measured 19 transcriptomes for stalk internodes of four different early developmental stages. Data analysis of the transcriptomes defined four developmental zones on the stalks and identified 12 specific gene sets with specific expression patterns across the zones. Using weighted gene co-expression network analysis (WGCNA), we found that two co-expression modules together with candidate genes were involved in stalk elongation and the thickening of pearl millet. Among the elongation-related candidate genes, we established by SELEX that a MYB-family transcription factor PMF7G02448 can bind to the promoters of three cell wall synthases genes (CesAs). In summary, these findings provide insights into stalk development and offer potential targets for future genetic improvement in pearl millet.

Conventional sterilization methods limit smallholder mushroom cultivation in PNG. This study evaluated alternative disinfection approaches for Pleurotus ostreatus (P. ostreatus) using coffee parchment and Cenchrus fungiraminus (C. fungigraminus) as substrates. After screening 20 strains, the superior strain PXF9 was selected. Three methods were compared: (1) Complete Sterilization with Aseptic Inoculation (CSAI) applied to T1 (experimental) and T2 (sawdust control); (2) Short Sterilization with Open Inoculation (SSOI) applied to T3 (experimental) and T5 (control); and (3) Non sterilization with Open Inoculation (NSOI) applied to T4 (experimental). CSAI (T1) achieved the highest yield (3985.26 ± 2.00 ^d g/24 bags), biological efficiency (83.03%), protein (28.44 g/100 g), and profit (14.76 USD), with the fastest colonization (21 days). SSOI (T3) produced the largest fruiting bodies; NSOI (T4) had the lowest heavy metal levels. SSOI and NSOI were economically beneficial (9.88 and 5.96 UDS per 24 bags). Bioactive compounds (e.g., naringenin, ergosterol peroxide), were detected across treatments. While CSAI maximizes productivity, SSOI and NSOI offer low-cost alternatives for resource-limited farmers.

Backgrounds: Pyricularia is a multispecies complex that could infect and cause severe blast disease on diverse hosts, including rice, wheat and many other grasses. Although the genome size of this fungal complex is small [~40 Mbp for Pyricularia oryzae (syn. Magnaporthe oryzae ), and ~45 Mbp for P. grisea ], the genome plasticity allows the fungus to jump and adapt to new hosts. Therefore, deciphering the genome basis of individual species could facilitate the evolutionary and genetic study of this fungus. However, except for the P. oryzae subgroup, many other species isolated from diverse hosts, such as the Pennisetum grasses, remain largely uncovered genetically. Results: Here, we report the genome sequence of a pyriform-shaped fungal strain P. penniseti P1609 isolated from a Pennisetum grass (JUJUNCAO) using PacBio SMRT sequencing technology. We performed a phylogenomic analysis of 28 Magnaporthales species and 5 non-Magnaporthales species and addressed P1609 into a Pyricularia subclade that is distant from P. oryzae . Comparative genomic analysis revealed that the pathogenicity-related gene repertoires were fairly different between P1609 and the P. oryzae strain 70-15, including the cloned avirulence genes, other putative secreted proteins, as well as some other predicted Pathogen-Host Interaction ( PHI ) genes. Genomic sequence comparison also identified many genomic rearrangements. Conclusion: Taken together, our results suggested that the genomic sequence of the P. penniseti P1609 could be a useful resource for the genetic study of the Pennisetum -infecting Pyricularia species.

Conventional sterilization limits smallholder mushroom cultivation in Papua New Guinea. This study evaluated alternative disinfection methods for Pleurotus ostreatus using coffee parchment and Juncao grass substrates. Twenty strains were screened; the superior strain PXF9 was selected. Three methods were compared: CSAI (T1 and T2), SSOI, (T3), and NSOI (T4). Growth, yield, nutrition, heavy metals, enzymes, and metabolites were assessed. Strain PXF9 showed superior growth. CSAI (T1) achieved the highest yield (3985 g/24 bags), biological efficiency (83.03%), protein (28.44 g/100g), and profit ($14.76), with fastest colonization (21 days). SSOI (T3) produced the largest fruiting bodies, while NSOI (T4) yielded the lowest heavy metal levels. All nutritional values met or exceeded literature standards. SSOI and NSOI generated profits of $9.88 and $5.96 per 24 bags, respectively. Bioactive compounds (naringenin, ergosterol peroxide) were detected across treatments. CSAI maximizes productivity, but SSOI and NSOI are viable low-cost alternatives for resource-limited farmers requiring no autoclave. These findings provide flexible, evidence-based options for sustainable mushroom cultivation using locally available agricultural wastes in tropical regions.