6082 aluminum alloy is widely applied in marine engineering, rail transportation and other industries owing to its excellent comprehensive performance. Welding heat source characteristics exert a decisive influence on the microstructure and mechanical properties of welded joints and become a major constraint for the application of medium-thick aluminum alloy welded structures. In this work, comparative tests of TIG and MIG welding were carried out on 16 mm thick 6082 aluminum alloy plates. Combining thermal simulation, metallographic observation and mechanical property tests, the temperature field distribution, microstructure, microhardness, tensile properties and bending properties of the two kinds of joints were systematically studied. The results show that TIG welding possesses high heat input, forming a broad temperature field with steep thermal gradients. Its weld microstructure is coarse and accompanied by severe coarsening of Mg₂Si precipitates, and the joint presents a highly fluctuating M-shaped microhardness distribution. The average tensile strength of TIG welded joints is 194 MPa, and all specimens fracture in the heat-affected zone. By contrast, MIG welding with low heat input produces a uniform temperature field, as well as a fine and homogeneous weld microstructure with dispersed precipitates. Its microhardness distribution is stable, and the average tensile strength reaches 256 MPa, 32% higher than that of TIG joints. Both welding methods deliver favorable bending performance. The difference in heat input and cooling behavior changes the grain evolution and precipitate characteristics and further dominates the final mechanical performance of joints. MIG welding is more suitable for multi-layer, multi-pass welding of 16 mm thick 6082 aluminum alloy. This work clarifies the correlation between heat input, microstructure and mechanical properties, and the optimized process can effectively improve the microstructural uniformity of the weld joint and enhance its mechanical properties.